[pdbjlvh2]Protein Model on 8sd0_A_1_B

Protein Model on 8sd0_A_1_B_1 (TEMPLATE: 8sd0 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(RIGI_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [636 aa]	Antiviral innate immune response receptor RIG-I :DDX58_HUMAN
2	b		B 1 (B)	polymer(polyribonucleotide)	p3SLR14	298N 300I 325S 326G 347T 349Q 353N 379K 380Q 381H 499I 507Q 510E 511Q 514V 518K 546R 635K 636T 637R 697T 698S 718V 750K 829C 830H 847H 851K 853F 854S 861K 872D 875I 887I 888K 906S 907K 908W 909K (identity: 100.0 %/93.3 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8sd0_A_1 identity=93.3%

queryA       242:KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 341
                :****************************************************************************************************:
8sd0_A_1     242:KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 341
SecStr          :   HHHHHHHHHHHTT  BEEE SSHHHHHHHHHHHHHHHHHS  TT     EEE SSHHHHHHHHHHHHHHTTTTS       TTT SS  HHHHHHT :    
ExpBur          :eeeebbebbbebbeeeebbbbbbeeeebbbebbbbbbeebbeeeeeeeebbbbbbbeeeebbeebeeebeeebeeeeeebebbbeeeeeeeebeebbeeb:    
Contact         :                                                        b b                        bb               

queryA       342:DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT: 441
                :****************************************************************************************************:
8sd0_A_1     342:DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT: 441
SecStr          :SSB   HHHHHHHHHHSSS  GGG SBEEEETGGG SSS HHHHHHHHHHHHHHTT   S  B  EEES    TT  SHHHHHHHHHHHHHHHT SB   :    
ExpBur          :bbbbbbbebbbebbeeeebeebeebebbbbbebeebeeeebbbebbbebbebeeeeeeeeebbbbbbbeebbeeebeeeeebbeebbebbbbbbbbbbbb:    
Contact         :     b b   b                         bbb                                                            

queryA       442:VKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY: 541
                :****************************************************************************************************:
8sd0_A_1     442:VKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY: 541
SecStr          :  TTHHHHHHS    EE  EE    S  HHHHHHHHHHHHHHHHHTTT TTGGGS  S    TTSHHHHHHHHHHHHHGGG   TTSSHHHHHHHHHHHH:    
ExpBur          :beebeeebeeeeeeeeeeeeebeebeeeebeebbbebbeebbebbeeebeebeeebeeeeeeebeeebeebbeebbebbbebeeeeeeebbebbbbbbbb:    
Contact         :                                                         b       b  bb  b   b                       

queryA       542:TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD: 641
                :****************************************************************************************************:
8sd0_A_1     542:TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD: 641
SecStr          :HHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHTT  SHHHHHHHHHHHHHHHHHHHHHT GGG  HHHHHHHHHHHHHHHH TT  EEEE S HHHHH:    
ExpBur          :bebbeebbebbbbbebbbbebbbeebeebbeeeeeebeeebbeebbeebeeebeebeebbeeeebebebbebbbebbeebbeeeeebebbbbbeeeebbe:    
Contact         :    b                                                                                        bbb    

queryA       642:ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL: 741
                :********************                            **********       *****************           *******:
8sd0_A_1     642:ALKNWIEGNPKLSFLKPGILXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHNILIATSVXXXXXXXAQCNLVILYEYVGNVIKXXXXXXXXXXXGSKCFLL: 741
SecStr          :HHHHHHHT TT  S      ----------------------------  SEEEES  -------    EEEEES  S S  -----------  EEEEE:    
ExpBur          :bbeebbeebeebeebeebee----------------------------eebbebbeee-------eebebbbbbbeeeeeee-----------ebebbbb:    
Contact         :                                                       bb                   b                       

queryA       742:TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKEC: 841
                :****************************************************************************************************:
8sd0_A_1     742:TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKEC: 841
SecStr          :ES HHHHHHHHHHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHHHS        SS  EEE TTT  EEEEGGGEEESSSS EEE  STGGGS:    
ExpBur          :beeebbbeebeeeeebeebbeebbeebeeeeeeebeeebeeebeebbeebeeeeeeeeeebeeebbbbbebbbbebbebeebbbbeeeebbbbeeebeee:    
Contact         :        b                                                                              bb           

queryA       842:FVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAEM: 923
                :**********************************************************************************:
8sd0_A_1     842:FVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAEM: 923
SecStr          :EEEEE SS    SS EEEEEEEE SSS   EEEEEEESSSSEEEEE GGG EEE TTT  EE  SSTTT  S   B  TTT :    
ExpBur          :beeeeeeeeeeeeebebebebbbeeebbebebbbbbeeeeeebbbbebebbbbbbeeeeebeeeeebeebebeeeebeeeee:    
Contact         :     b   b bb      b          b  b           bb                 bbbb

Protein Model on 8sd0_A_1_B_1 (TEMPLATE: 8sd0 )

Input Residue Numbers for Focused Sites