[pdbjlvh2]Protein Model on 8dvr_A_1_D

Protein Model on 8dvr_A_1_D_1 (TEMPLATE: 8dvr )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(RIGI_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [635 aa]	Antiviral innate immune response receptor RIG-I :DDX58_HUMAN
2	b		D 1 (B)	non-polymer(GTP)	GUANOSINE-5'-TRIPHOSPHATE	830H 847H 851K 853F 858K 861K 872D 874G 875I 888K (identity: 100.0 %/93.1 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8dvr_A_1 identity=93.1%

queryA       242:KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 341
                :****************************************************************************************************:
8dvr_A_1     242:KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 341
SecStr          :   HHHHHHHHHHHTS  B  B SSHHHHHHHHHHHHHHHHHSS TT     EEE SSHHHHHHHHHHHHHHTTSS        TTT SS  HHHHHHT :    
ExpBur          :eeeebbeebbebbbeeebbbbbbeeeebbbebbbbbbbebbeeeeeeeebbbbbbbeeeeebeebeeebeeebeeeebebebbbeeeeeeeebeebbeeb:    

queryA       342:DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT: 441
                :****************************************************************************************************:
8dvr_A_1     342:DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT: 441
SecStr          :SS    HHHHHHHHHHSSS  GGG SBEEEETGGGTTSS HHHHHHHHHHHHHHTTT  S  B  EEBS     S  SHHHHHHHHHHHHHHHT SB   :    
ExpBur          :bbbbbbbebbbebbeeeebeebeebbbbbbbebeebeeeeebbebbbebbebeeeeeeeeebbbbbbbeebebeebeeeeebbeebbebbbbbbbbbbbb:    

queryA       442:VKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY: 541
                :****************************************************************************************************:
8dvr_A_1     442:VKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY: 541
SecStr          : SS  TTGGGS     B  EE    S  HHHHHHHHHHHHHHHHHTTT TTHHHH  S    TTSHHHHHHHHHHHHHHTT   TTSSHHHHHHHHHHHH:    
ExpBur          :beebeeebeeeeeeeeeeeeebeebeeeebeebbbebbeebbebbeeebeebeeebeeeebebbeeebeebbeebbeebbeeeeeeeeebbebbbbbbbb:    

queryA       542:TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD: 641
                :****************************************************************************************************:
8dvr_A_1     542:TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD: 641
SecStr          :HHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHTT  SHHHHHHHHHHHHHHHHHHHHHT GGG  HHHHHHHHHHHHHHHH TT  EEEE SSGGGHH:    
ExpBur          :bebbeebbbbbbbbebbbbebbbeebeebbeebeeebeeebbeebbeebeeebeebeebbeeeebebebbebbbebbeebbeeeeebebbbbbeeeebbe:    

queryA       642:ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL: 741
                :********************                            **********       ************            ***********:
8dvr_A_1     642:ALKNWIEGNPKLSFLKPGILXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHNILIATSVXXXXXXXAQCNLVILYEYVXXXXXXXXXXXXGRARGSKCFLL: 741
SecStr          :HHHHHHHH TT  S      ----------------------------  SEEEES  -------    EEEEET  ------------  SSS EEEEE:    
ExpBur          :bbeebbeebeebeebeebee----------------------------eeebebbeee-------eeeebebbbbee------------ebeeebbbbbb:    

queryA       742:TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKEC: 841
                :****************************************************************************************************:
8dvr_A_1     742:TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKEC: 841
SecStr          :ES HHHHHHHHHHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHHHS       B S  EEE TTT  EEEEGGGEEESSSS EEE  HHHHTS:    
ExpBur          :beeebbbeebeeeeebeebbeebbeebeeeeeeebeeebeebbeebeeebeeeeeeeeeeeeeebbbbbbbbbbebbebeebbbbeeeebbbeeeebeeb:    
Contact         :                                                                                        b           

queryA       842:FVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAEM: 923
                :**********************************************************************************:
8dvr_A_1     842:FVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAEM: 923
SecStr          :EEEEE SS    SS EEEEEEEE SSS   B EEEEESSSS EEEE GGG EEE SSS  EE  SSTTT  B  EE  TTT :    
ExpBur          :beeeebeeeeeeebbebebbbbbeeebbebebbbbbeeeeeebbbbebebbbbbbeeeeebeeeeebeebebeeeebeeeee:    
Contact         :     b   b b    b  b          b bb            b

Protein Model on 8dvr_A_1_D_1 (TEMPLATE: 8dvr )

Input Residue Numbers for Focused Sites