[pdbjlvh2]Protein Model on 8dvr_A_1_B

Protein Model on 8dvr_A_1_B_1 (TEMPLATE: 8dvr )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(RIGI_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [635 aa]	Antiviral innate immune response receptor RIG-I :DDX58_HUMAN
2	b		B 1 (B)	polymer(polyribonucleotide)	p3SLR30	298N 300I 325S 326G 349Q 353N 379K 380Q 381H 499I 507Q 508K 510E 511Q 514V 518K 546R 635K 636T 637R 697T 698S 718V 750K 829C 851K 853F 854S 888K 906S 907K 908W 909K (identity: 100.0 %/93.1 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8dvr_A_1 identity=93.1%

queryA       242:KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 341
                :****************************************************************************************************:
8dvr_A_1     242:KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 341
SecStr          :   HHHHHHHHHHHTS  B  B SSHHHHHHHHHHHHHHHHHSS TT     EEE SSHHHHHHHHHHHHHHTTSS        TTT SS  HHHHHHT :    
ExpBur          :eeeebbeebbebbbeeebbbbbbeeeebbbebbbbbbbebbeeeeeeeebbbbbbbeeeeebeebeeebeeebeeeebebebbbeeeeeeeebeebbeeb:    
Contact         :                                                        b b                        bb               

queryA       342:DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT: 441
                :****************************************************************************************************:
8dvr_A_1     342:DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT: 441
SecStr          :SS    HHHHHHHHHHSSS  GGG SBEEEETGGGTTSS HHHHHHHHHHHHHHTTT  S  B  EEBS     S  SHHHHHHHHHHHHHHHT SB   :    
ExpBur          :bbbbbbbebbbebbeeeebeebeebbbbbbbebeebeeeeebbebbbebbebeeeeeeeeebbbbbbbeebebeebeeeeebbeebbebbbbbbbbbbbb:    
Contact         :       b   b                         bbb                                                            

queryA       442:VKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY: 541
                :****************************************************************************************************:
8dvr_A_1     442:VKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY: 541
SecStr          : SS  TTGGGS     B  EE    S  HHHHHHHHHHHHHHHHHTTT TTHHHH  S    TTSHHHHHHHHHHHHHHTT   TTSSHHHHHHHHHHHH:    
ExpBur          :beebeeebeeeeeeeeeeeeebeebeeeebeebbbebbeebbebbeeebeebeeebeeeebebbeeebeebbeebbeebbeeeeeeeeebbebbbbbbbb:    
Contact         :                                                         b       bb bb  b   b                       

queryA       542:TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD: 641
                :****************************************************************************************************:
8dvr_A_1     542:TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD: 641
SecStr          :HHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHTT  SHHHHHHHHHHHHHHHHHHHHHT GGG  HHHHHHHHHHHHHHHH TT  EEEE SSGGGHH:    
ExpBur          :bebbeebbbbbbbbebbbbebbbeebeebbeebeeebeeebbeebbeebeeebeebeebbeeeebebebbebbbebbeebbeeeeebebbbbbeeeebbe:    
Contact         :    b                                                                                        bbb    

queryA       642:ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL: 741
                :********************                            **********       ************            ***********:
8dvr_A_1     642:ALKNWIEGNPKLSFLKPGILXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHNILIATSVXXXXXXXAQCNLVILYEYVXXXXXXXXXXXXGRARGSKCFLL: 741
SecStr          :HHHHHHHH TT  S      ----------------------------  SEEEES  -------    EEEEET  ------------  SSS EEEEE:    
ExpBur          :bbeebbeebeebeebeebee----------------------------eeebebbeee-------eeeebebbbbee------------ebeeebbbbbb:    
Contact         :                                                       bb                   b                       

queryA       742:TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKEC: 841
                :****************************************************************************************************:
8dvr_A_1     742:TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKEC: 841
SecStr          :ES HHHHHHHHHHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHHHS       B S  EEE TTT  EEEEGGGEEESSSS EEE  HHHHTS:    
ExpBur          :beeebbbeebeeeeebeebbeebbeebeeeeeeebeeebeebbeebeeebeeeeeeeeeeeeeebbbbbbbbbbebbebeebbbbeeeebbbeeeebeeb:    
Contact         :        b                                                                              b            

queryA       842:FVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAEM: 923
                :**********************************************************************************:
8dvr_A_1     842:FVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAEM: 923
SecStr          :EEEEE SS    SS EEEEEEEE SSS   B EEEEESSSS EEEE GGG EEE SSS  EE  SSTTT  B  EE  TTT :    
ExpBur          :beeeebeeeeeeebbebebbbbbeeebbebebbbbbeeeeeebbbbebebbbbbbeeeeebeeeeebeebebeeeebeeeee:    
Contact         :         b bb                                 b                 bbbb

Protein Model on 8dvr_A_1_B_1 (TEMPLATE: 8dvr )

Input Residue Numbers for Focused Sites