Protein Model on 7tnx_A_1_C_1 (TEMPLATE: 7tnx )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(RIGI_HUMAN) A 1 (A) polymer(polypeptide(L)) [647 aa] Antiviral innate immune response receptor RIG-I :DDX58_HUMAN
2 b C 1 (C) polymer(polyribonucleotide) p3dsRNAb 298N 299Q 300I 325S 326G 347T 349Q 353N 507Q 510E 514V 518K 546R 635K 637R 662T 697T 698S 851K 853F 854S (identity: 100.0 %/94.7 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7tnx_A_1 identity=94.7%
queryA       241:FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN: 340
                :****************************************************************************************************:
7tnx_A_1     241:FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN: 340
SecStr          :    HHHHHTTHHHHSS   EEE   HHHHHHHHHHHHHHHHHSS TT     EEE SSHHHHHHHHHHHHHHTTTT        TTT SS  HHHHHHH:    
ExpBur          :eeeeebbebbbeebeeeebbbbbbbbbebbbebbbbbbeebbeeeeeeeebbbbbbbeeeebbeebeeebeeebeeeeeebebbbeeeeeeeebeebbee:    
Contact         :                                                         bbb                        bb              

queryA       341:NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA: 440
                :****************************************************************************************************:
7tnx_A_1     341:NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA: 440
SecStr          : SS    HHHHHHHHHHTSS  GGG SBEEEESGGG SSSSHHHHHHHHHHHHHHTT   S  B  EEES    SS  SHHHHHHHHHHHHHHTT S   :    
ExpBur          :bbbbbbbbebbbebbeeeebeebeebebbbbbbbeebeeeeebbebbbebbebeeeeeeeeebbbbbbbbebbbeebeeeeebbeebbebbbbbbbbbbb:    
Contact         :      b b   b                                                                                       

queryA       441:TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL: 540
                :****************************************************************************************************:
7tnx_A_1     441:TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL: 540
SecStr          :  SS HHHHHHS    EE  EE    S  HHHHHHHHHHHHHHHHHTTT TTGGGS  SS   SSSHHHHHHHHHHHHHHTT   TTSSHHHHHHHHHHH:    
ExpBur          :bbeebeeebeeeebebeeeeeebeebeeeebeebbbebbeebbebbeeebeebeeebeeeeeebbeeebeebbeebbeebbebeeeeeeebbebbbbbbb:    
Contact         :                                                                  b  b   b   b                      

queryA       541:YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV: 640
                :****************************************************************************************************:
7tnx_A_1     541:YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV: 640
SecStr          :HHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHTT   HHHHHHHHHHHHHHHHHHHHHT GGG  HHHHHHHHHHHHHHHH S   EEEE S TTHH:    
ExpBur          :bbebbeebbbbbbbbebbbbebbbeebeebbeebeeebebebbeebbebbeeebeebeebbeeeebebebbebbbebbeebbeeeeebebbbbbeeeebb:    
Contact         :     b                                                                                        b b   

queryA       641:DALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFL: 740
                :**********************                           **********      *************   *******************:
7tnx_A_1     641:DALKNWIEGNPKLSFLKPGILTXXXXXXXXXXXXXXXXXXXXXXXXXXXDHNILIATSVXXXXXXIAQCNLVILYEYVXXXIKMIQTRGRGRARGSKCFL: 740
SecStr          :HHHHHHHHT TT  S  B    ---------------------------  SEEEES  ------      EEEES  ---  S  TTS    S  EEEE:    
ExpBur          :ebbeebbeebeebeebeebeee---------------------------eebbebbbee------eeebebbbbbbbe---eebbbeeebeeeeebebbb:    
Contact         :                     b                                  bb                                          

queryA       741:LTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKE: 840
                :****************************************************************************************************:
7tnx_A_1     741:LTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKE: 840
SecStr          :EES HHHHHHHHHHHHHHHHHHHHHHHHHHS SHHHHHHHHHHHHHHHHHHHHS         S  EEE TTT  EEEEGGGEEESSSS EEE  GGGGG:    
ExpBur          :bbeeeebbeebeeeeebeebbeebbeebeeeeeeebeeebeebbeeebeebeeeeeeeeeeeeeebbbbbbbbbbebbebeebbbbeeeebbbbbeebee:    

queryA       841:CFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAEM: 923
                :***********************************************************************************:
7tnx_A_1     841:CFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAEM: 923
SecStr          :SEEEEE SS  EETTEEEEEEEEE SSS   EEEEEEESSSSEEEEE GGG EEE SSS  EE  SSGGG  S  EE  TTT :    
ExpBur          :bbeeeebeeeeeeeebebebbbbbeeeebebebbbbbebeeeebbbbebebbbbbbeeeeebeeeeebeebebeeeebeeeee:    
Contact         :          b bb

Input Residue Numbers for Focused Sites

ex) 2,15,123