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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(RIGI_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [650 aa] | Antiviral innate immune response receptor RIG-I :DDX58_HUMAN | |
2 | b | H 1 (Y) | polymer(polyribonucleotide) | dsRNA strand 2 | 298N 300I 326G 347T 349Q 350I 353N 511Q 514V 518K 546R 635K 636T 637R 662T 663G 664R 697T 698S 699V 830H 878K 879Y 880K (identity: 100.0 %/95.6 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7jl3_A_1 identity=95.6% |
queryA 239:SPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIV: 338 :****************************************************************************************************: 7jl3_A_1 36:SPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIV: 135 SecStr : HHHHHHHHHHHHT EEEE TTS HHHHHHHHHHHHHHTS TT EEE SSHHHHHHHHHHHHHHTTTTT EEE SS SS HHHHH: ExpBur :eeeeeeebbebbbeebeeeebbbbbbebebebebbbbbbbeebbeeeeeeeebbbbbbbbebbbbeebeeebeeebeeeeeeeebbbeeeeeeeebeebb: Contact : b b b queryA 339:ENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASV: 438 :*********************************************************** ***************************************: 7jl3_A_1 136:ENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGXXGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASV: 235 SecStr :HH SEEE HHHHHHHHHHTSS GGG SEEEETTGGG STT HHHHHHHHHHHHHH -- EEEEEES TT SSHHHHHHHHHHHHHHTT E: ExpBur :eebbbbbbbbeebbebbeeeebeebeebebbbbbbbbbbeeeeebbebbbebbeeeeee--eeebbbbbbbbbbbbeebeeeeebbeebbebbbbbbbee: Contact : b bb b queryA 439:IATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKAL: 538 :**************************************************************************************** ***********: 7jl3_A_1 236:IATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPXKDEESRICKAL: 335 SecStr :EE TTHHHHHHHS EEEEEE S HHHHHHHHHHHHHHHHHHHHSS SSTTS S SSSHHHHHHHHHHHHHHTT - HHHHHHHHHH: ExpBur :bbbbeeeeebbeeebeebebeeeebeeeeebebeebbbebbeebbeebeeebeebeeebebeeeeeeeeebeebbeebbeebbeeebe-eeebeeebbbb: Contact : b b b queryA 539:FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRA: 638 :************************************ **********************************************************: 7jl3_A_1 336:FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVXXXXXXEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRA: 435 SecStr :HHHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHH ------ HHHHHHHHHHHHHHHHHHHHT GGG HHHHHHHHHHHHHHHH SS EEEE S HH: ExpBur :bbbbbbbeebbbbbeebeebbbebbbeebeeebeee------ebeeebeebbeebbeebeebbeeeebebebbebbbebbeebbeeeeebbbbbbbeeee: Contact : b bbb queryA 639:LVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKC: 738 :*************************** *************** **************************************************: 7jl3_A_1 436:LVDALKNWIEGNPKLSFLKPGILTGRGXXXXXXGMTLPAQKCILDAFKXXGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKC: 535 SecStr :HHHHHHHHHHT SS S EEEE ------ HHHHHHHHHHT -- EEEE GGG S S EEEEES SHHHHHHHHTT STT EE: ExpBur :bbebbeebbeebeebeebebbebbeee------ebeeeebbebeeebe--eeeebbbbbebbbbbbebeebebbbbbbbeeebbebbbbbbbbebeebeb: Contact : bbb bbb queryA 739:FLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAF: 838 :********************************************************** ***********************************: 7jl3_A_1 536:FLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKXXXXXXXENKKLLCRKCKALACYTADVRVIEECHYTVLGDAF: 635 SecStr :EEEES HHHHHHHHHHHHHHHHHHHHHHHHHTS TTTHHHHHHHHHHHHHHHHHHH ------- EEEETTT EEEEGGGEEEETTTEEEE SHHH: ExpBur :bbbbeeeebbeebeebeeeeebbeebbeebeeeeeeebbeebeeebeeeeeebeeeee-------eeeebbbbbbbbebbebeebebbeeeebbbeeeeb: Contact : b queryA 839:KECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPF: 918 :************* *************************************************************: 7jl3_A_1 636:KECFVSRPHPKPKXXXXXXKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPF: 715 SecStr :HHHEEE SS TT ------ BEEESSTT EEEEE SS EEEEE GGGEEEE SSS EE SSTTT S : ExpBur :eebbeeeeebeee------eeeebbbeeeebebebbebeeeeeeebbbbebebbbbbbeeeeebeeeeebeebeeeeeee: Contact : bbb |