Protein Model on 7jl3_A_1_G_1 (TEMPLATE: 7jl3 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(RIGI_HUMAN) A 1 (A) polymer(polypeptide(L)) [650 aa] Antiviral innate immune response receptor RIG-I :DDX58_HUMAN
2 b G 1 (X) polymer(polyribonucleotide) dsRNA strand1 379K 380Q 381H 508K 511Q 723K 750K 829C 830H 858K 888K 907K 908W 909K (identity: 100.0 %/95.6 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7jl3_A_1 identity=95.6%
queryA       239:SPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIV: 338
                :****************************************************************************************************:
7jl3_A_1      36:SPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIV: 135
SecStr          :      HHHHHHHHHHHHT  EEEE  TTS HHHHHHHHHHHHHHTS TT    EEE  SSHHHHHHHHHHHHHHTTTTT  EEE  SS SS   HHHHH:    
ExpBur          :eeeeeeebbebbbeebeeeebbbbbbebebebebbbbbbbeebbeeeeeeeebbbbbbbbebbbbeebeeebeeebeeeeeeeebbbeeeeeeeebeebb:    

queryA       339:ENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASV: 438
                :***********************************************************  ***************************************:
7jl3_A_1     136:ENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGXXGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASV: 235
SecStr          :HH SEEE  HHHHHHHHHHTSS  GGG SEEEETTGGG STT HHHHHHHHHHHHHH  --    EEEEEES    TT SSHHHHHHHHHHHHHHTT  E:    
ExpBur          :eebbbbbbbbeebbebbeeeebeebeebebbbbbbbbbbeeeeebbebbbebbeeeeee--eeebbbbbbbbbbbbeebeeeeebbeebbebbbbbbbee:    
Contact         :                                        bbb                                                         

queryA       439:IATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKAL: 538
                :**************************************************************************************** ***********:
7jl3_A_1     236:IATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPXKDEESRICKAL: 335
SecStr          :EE   TTHHHHHHHS   EEEEEE    S  HHHHHHHHHHHHHHHHHHHHSS SSTTS   S  SSSHHHHHHHHHHHHHHTT    - HHHHHHHHHH:    
ExpBur          :bbbbeeeeebbeeebeebebeeeebeeeeebebeebbbebbeebbeebeeebeebeeebebeeeeeeeeebeebbeebbeebbeeebe-eeebeeebbbb:    
Contact         :                                                                     b  b                           

queryA       539:FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRA: 638
                :************************************      **********************************************************:
7jl3_A_1     336:FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVXXXXXXEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRA: 435
SecStr          :HHHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHH ------ HHHHHHHHHHHHHHHHHHHHT GGG  HHHHHHHHHHHHHHHH SS  EEEE S HH:    
ExpBur          :bbbbbbbeebbbbbeebeebbbebbbeebeeebeee------ebeeebeebbeebbeebeebbeeeebebebbebbbebbeebbeeeeebbbbbbbeeee:    

queryA       639:LVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKC: 738
                :***************************      ***************  **************************************************:
7jl3_A_1     436:LVDALKNWIEGNPKLSFLKPGILTGRGXXXXXXGMTLPAQKCILDAFKXXGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKC: 535
SecStr          :HHHHHHHHHHT SS  S  EEEE    ------   HHHHHHHHHHT --    EEEE GGG S    S   EEEEES   SHHHHHHHHTT  STT EE:    
ExpBur          :bbebbeebbeebeebeebebbebbeee------ebeeeebbebeeebe--eeeebbbbbebbbbbbebeebebbbbbbbeeebbebbbbbbbbebeebeb:    
Contact         :                                                                                    b               

queryA       739:FLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAF: 838
                :**********************************************************       ***********************************:
7jl3_A_1     536:FLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKXXXXXXXENKKLLCRKCKALACYTADVRVIEECHYTVLGDAF: 635
SecStr          :EEEES HHHHHHHHHHHHHHHHHHHHHHHHHTS TTTHHHHHHHHHHHHHHHHHHH  -------   EEEETTT  EEEEGGGEEEETTTEEEE SHHH:    
ExpBur          :bbbbeeeebbeebeebeeeeebbeebbeebeeeeeeebbeebeeebeeeeeebeeeee-------eeeebbbbbbbbebbebeebebbeeeebbbeeeeb:    
Contact         :           b                                                                              bb        

queryA       839:KECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPF: 918
                :*************      *************************************************************:
7jl3_A_1     636:KECFVSRPHPKPKXXXXXXKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPF: 715
SecStr          :HHHEEE SS TT ------   BEEESSTT     EEEEE SS EEEEE GGGEEEE SSS  EE  SSTTT  S     :    
ExpBur          :eebbeeeeebeee------eeeebbbeeeebebebbebeeeeeeebbbbebebbbbbbeeeeebeeeeebeebeeeeeee:    
Contact         :                   b                             b                  bbb

Input Residue Numbers for Focused Sites

ex) 2,15,123