Protein Model on 7jl2_C_1_A_1 (TEMPLATE: 7jl2 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(RIGI_HUMAN) C 1 (A) polymer(polypeptide(L)) [662 aa] Interferon-induced helicase C domain-containing protein 1 :IFIH1_HUMAN
2 b A 1 (X) polymer(polyribonucleotide) RNA (44-MER) 331N(K) 379K 380Q(E) 511Q 672G(P) 676P(N) 720N 750K(R) 829C(M) 830H 888K 907K 908W (identity: 53.8 %/39.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7jl2_C_1 identity=39.0%
queryA       244:RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL-KKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFE---RHGYRVTGISGATAENVPVEQIVE: 339
                :* ** * * **  *** *** *** *** *   *   ** **      ***    *     **    * * *       *** * ** *         * :
7jl2_C_1      23:RPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQ---LFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVK: 119
SecStr          : HHHHHHHTGGGSS  EEEE  SSS HHHHHHHHHHHHHHHHHHHT    EEEEESSHHHHHH---HHHHHTHHHHTTT  EEE  TTS  SS HHHHHH:    
ExpBur          :eebbebbbebbeeeeebbbbbebebebbebbbbbbeebbeeeeeeeeebbbbbbbbeebbbeb---bbeebbeeebeeebebeebbeeeeeeeebeebbe:    
Contact         :                                                                                           b        

queryA       340:NNDIIILTPQILVNNLKKGTIP-----SLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSG--------PLPQVIGLTASVGVGDAKNTDEALDY: 426
                :  **** * *** * *            ** * * * **** * *   ** **  ** ***             ****  ***** *** *     *   :
7jl2_C_1     120:SCDIIISTAQILENSLLNLXXXXXAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKXXXXVIPLPQILGLTASPGVGGATKQAKAEEH: 219
SecStr          :H SEEEEEHHHHHHHHS  -----    GGG SEEEEETGGG  TT HHHHHHHHHHHHHHHHHHHH ----     EEEEEES    SS SSHHHHHHH:    
ExpBur          :ebebbbbbbeebbebbeee-----ebbebeebbbbbbbbbbebeeeeebbebbbebbeeeeebeeeee----eeeebbbbbbbbbbbbeebeeeeebeeb:    
Contact         :                                            bb                                                      

queryA       427:ICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMP: 526
                :* **** ***  * *** **  *      * * *        * **      *                 *      **** ****     *        :
7jl2_C_1     220:ILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADXXREDPFKEKLLEIMTRIQTYCQ-----MSPMS-----DFGTQPYEQWAIQMEKKA----AK: 305
SecStr          :HHHHHHHHT S      S HHHHHHHS   EEEEEEE --   HHHHHHHHHHHHHHHHTT-----   SS----- TTSHHHHHHHHHHHHHH----HH:    
ExpBur          :bbbbbbebbbeebbbbeeeeeebeeeeeebeeeebebe--eebebeeebbebbeebbeebe-----eeeee-----eeeeeebbebbeeebeeb----be:    
Contact         :                                                                                    b               

queryA       527:DKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQD-------------------------------LTQRFEEKLQ: 595
                :      * *        ****** ** *    ** **   *  *        *  **                                 *   * *   :
7jl2_C_1     306:EGNRKERVC------AEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXETDRFLMTLFFENNK: 399
SecStr          :HT TTTHHH------HHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHHHTT ---------------------------- TTHHHHHHHHHHHH:    
ExpBur          :eeeeebbbb------bebbebbbbbbeebeebbbebbbeebeebbeebeeebeeeee----------------------------ebeeebbebbeebbe:    

queryA       596:ELESVSRDPSNENPKLEDLCFILQEEYHLNPETIT-ILFVKTRALVDALKNWIEGNPKLS--FLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN: 692
                : *      *  ** **  *     * *    *    * * ***    **  **  * *      *   * * *       **   **     *   *  *:
7jl2_C_1     400:MLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGXSSEFKPMTQNEQKEVISKFR-TGKIN: 498
SecStr          :HHHHHHT TTS  HHHHHHHHHHHHHHHHHSS   EEEE SSHHHHHHHHHHHHH HHHHHTT  EEEE    -  SS    HHHHHHHHHHHH-HTSS :    
ExpBur          :ebeebbeeeeeeeebbeebeebbbebbeebeeebbbbbbbeeeebbebbbebbeeeeebeeeebeeebbbeee-eeeeeebeeeebeebbeebe-eeebb:    
Contact         :                                                                               b   b                

queryA       693:ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLT-SNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIR: 791
                : **** ** ** **  ** ** *  * * * * * *** **  *   *   *  **** *  *   ****   *   *         ***  *       :
7jl2_C_1     499:LLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTYVLVAHSGSGVIERETVNDFREKMMYKAIHCVQNMKPEEYAHKILELQMQSIMEK: 598
SecStr          :EEEE GGGSSS   S   EEEEES    SHHHHHHHHH  STT EEEEEEETTSSSHHHHHHHHHHHHHHHHHHHHHTT  HHHHHHHHHHHHHHHHHHH:    
ExpBur          :bbbbbebbbbebebeebbbbbbbebeeebbbbbbbbbbbbbeebbbbbbbeeeeebeeebeebeeebebbeebbeebeeeeeeebeeebeebbeebeeee:    
Contact         :                           b                              b                                         

queryA       792:DSQEKPKPVPDKENK----KLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPHPKPKQFSSFEK-RAKIFCARQNCSHDWGIHVKYKTFEIPV: 886
                :    *        *       **  *  ***   *  ***  *       ***    *                 * *    *   **     *    * :
7jl2_C_1     599:KMKTKRNIAKHYXNNPSLITFLCKNCSVLACSGEDIHVIEKMHHVNMTPEFKELYIVREKXXXXXXXXXXQINGEIIC---KCGQAWGTMMVHKGLDLPC: 695
SecStr          :HHHHHHHHHHT -  TTS EEE SSS  EEEEGGGEEEETTTEEEE  HHHHHHSEEE  ----------  S EEE ---SSS EEEEEEEETTEEEEB:    
ExpBur          :eeeeeeeeeeee-eeeeebbbbbbbbeeebbebeebebbeeeeebbebeebeeebeeeee----------eeebebbb---ebbbebbebbebeeeebbb:    
Contact         :                                         bb                                                         

queryA       887:IKIESFVVEDIATGVQTLYSKW: 908
                : **  ***          * **:
7jl2_C_1     696:LKIRNFVVVFKNNSTKKQYKKW: 717
SecStr          :  GGGSEEE SSS  EE  SSS:    
ExpBur          :bebebbbbbeeeeeeeebbeee:    
Contact         : b                  bb

Input Residue Numbers for Focused Sites

ex) 2,15,123