Protein Model on 7jl1_A_1_D_1 (TEMPLATE: 7jl1 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(RIGI_HUMAN) A 1 (A) polymer(polypeptide(L)) [656 aa] Antiviral innate immune response receptor RIG-I :DDX58_HUMAN
2 b D 1 (B) polymer(polypeptide(L)) [171 aa] E3 ubiquitin-protein ligase RNF135 :RN135_HUMAN 461R 464E 616F 617I 619Q 620E 621E 623H 624L 652K (identity: 100.0 %/96.5 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7jl1_A_1 identity=96.5%
queryA       239:SPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIV: 338
                :****************************************************************************************************:
7jl1_A_1      36:SPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIV: 135
SecStr          :      HHHHHTTHHHHTT  EEEE  TTS HHHHHHHHHHHHHHHS TT    EEEE SSHHHHHHHHHHHHHHHHTT   EEEE SS SS   HHHHH:    
ExpBur          :eeeeeeebbebbbeebeeeebbbbbbebebbbebbbbbbbeebbeeeeeeeebbbbbbbebbbbbebbeeebeeebeeeeeeebbbbeeeeeeeebeebb:    

queryA       339:ENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASV: 438
                :***********************************************************  ***************************************:
7jl1_A_1     136:ENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGXXGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASV: 235
SecStr          :HH SEEEE HHHHHHHHHHTSS  GGG S EEES GGG STT HHHHHHHHHHHHHH  --     EEEEES    TT SSHHHHHHHHHHHHHHTT  E:    
ExpBur          :eebbbbbbbbeebbebbeeeebeebeebebbbbbbbbbbeeeeebbebbbebbeeeeee--eeebbbbbbbbbbbbeebeeeeebbeebbebbbbbbbee:    

queryA       439:IATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKAL: 538
                :**************************************************************************************** ***********:
7jl1_A_1     236:IATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPXKDEESRICKAL: 335
SecStr          :EEE  TTHHHHHHHS   EEEEEE    S  HHHHHHHHHHHHHHHHHHHHSS SSTT    S  TTSHHHHHHHHHHHHHHTT    -  HHHHHHHHH:    
ExpBur          :bbbbeeeeeebeeebeebebeeeebeeeeebebeebbbebbeebbeebeeebeebeeebeeeeeeeeeeebeebbeebbeebbeeeee-eeebbebbbbb:    
Contact         :                      b  b                                                                          

queryA       539:FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRA: 638
                :************************************      **********************************************************:
7jl1_A_1     336:FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVXXXXXXEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRA: 435
SecStr          :HHHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHH ------ HHHHHHHHHHTTHHHHHHHHT GGG  HHHHHHHHHHHHHHHH SS  EEEE SSHH:    
ExpBur          :bbbbbbbeebbbbbeebeebbbebbbeebeebbeee------ebeeebeeebeeebeebbebbeeeebebbbbebbbebbeebbeeeeebbbbbbbeeee:    
Contact         :                                                                             bb bbb bb              

queryA       639:LVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKC: 738
                :************************************************  **************************************************:
7jl1_A_1     436:LVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKXXGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKC: 535
SecStr          :HHHHHHHHHHT SS  S  EEEE  S EETTEE   HHHHHHHHHHH --    EEEE GGG S    SS  EEEEES   SHHHHHHHHT   STT EE:    
ExpBur          :bbebbeebbeebeebeebebbebbeeeeeeeeeebebeebbebbeebe--eeeebbbbbebbbbbbebeebbbbbbbbbeeebbebbbbbbbbebeebeb:    
Contact         :             b                                                                                      

queryA       739:FLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAF: 838
                :**********************************************************       ***********************************:
7jl1_A_1     536:FLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKXXXXXXXENKKLLCRKCKALACYTADVRVIEECHYTVLGDAF: 635
SecStr          :EEEES HHHHHHHHHHHHHHHHHHHHHHHGGGS TTHHHHHHHHHHHHHHHHHHHT  -------   EEEETTT  EEEEGGGB  BTTTB BB SHHH:    
ExpBur          :bbbbeeeebbeebeebeeebebbeebbeebeeeeeeebeeebeebbeeeeeeeeeeee-------ebeebbbbbbbbebbebeebebbeeeebbbeeeeb:    

queryA       839:KECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPF: 918
                :*************      *************************************************************:
7jl1_A_1     636:KECFVSRPHPKPKXXXXXXKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPF: 715
SecStr          :HHSB   SS S  ------   B  BSSSS     EEEEEETTEEEEEE GGGEEEE SSS  EE  SSTTT        :    
ExpBur          :eebbeeeeebeee------eeeebbbeeeebeeebbeeeeeeeeebbbbebebbbbbbeeeeebebeeebeebebeeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123