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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(RIGI_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [656 aa] | Antiviral innate immune response receptor RIG-I :DDX58_HUMAN | |
2 | b | C 1 (Y) | polymer(polyribonucleotide) | dsRNA strand 2 | 298N 299Q 300I 325S 326G 347T 349Q 350I 353N 511Q 514V 518K 546R 635K 636T 637R 662T 663G 664R 668N 697T 698S 699V 830H 878K 879Y 880K (identity: 100.0 %/96.5 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7jl1_A_1 identity=96.5% |
queryA 239:SPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIV: 338 :****************************************************************************************************: 7jl1_A_1 36:SPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIV: 135 SecStr : HHHHHTTHHHHTT EEEE TTS HHHHHHHHHHHHHHHS TT EEEE SSHHHHHHHHHHHHHHHHTT EEEE SS SS HHHHH: ExpBur :eeeeeeebbebbbeebeeeebbbbbbebebbbebbbbbbbeebbeeeeeeeebbbbbbbebbbbbebbeeebeeebeeeeeeebbbbeeeeeeeebeebb: Contact : bbb bb queryA 339:ENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASV: 438 :*********************************************************** ***************************************: 7jl1_A_1 136:ENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGXXGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASV: 235 SecStr :HH SEEEE HHHHHHHHHHTSS GGG S EEES GGG STT HHHHHHHHHHHHHH -- EEEEES TT SSHHHHHHHHHHHHHHTT E: ExpBur :eebbbbbbbbeebbebbeeeebeebeebebbbbbbbbbbeeeeebbebbbebbeeeeee--eeebbbbbbbbbbbbeebeeeeebbeebbebbbbbbbee: Contact : b bb b queryA 439:IATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKAL: 538 :**************************************************************************************** ***********: 7jl1_A_1 236:IATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPXKDEESRICKAL: 335 SecStr :EEE TTHHHHHHHS EEEEEE S HHHHHHHHHHHHHHHHHHHHSS SSTT S TTSHHHHHHHHHHHHHHTT - HHHHHHHHH: ExpBur :bbbbeeeeeebeeebeebebeeeebeeeeebebeebbbebbeebbeebeeebeebeeebeeeeeeeeeeebeebbeebbeebbeeeee-eeebbebbbbb: Contact : b b b queryA 539:FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRA: 638 :************************************ **********************************************************: 7jl1_A_1 336:FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVXXXXXXEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRA: 435 SecStr :HHHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHH ------ HHHHHHHHHHTTHHHHHHHHT GGG HHHHHHHHHHHHHHHH SS EEEE SSHH: ExpBur :bbbbbbbeebbbbbeebeebbbebbbeebeebbeee------ebeeebeeebeeebeebbebbeeeebebbbbebbbebbeebbeeeeebbbbbbbeeee: Contact : b bbb queryA 639:LVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKC: 738 :************************************************ **************************************************: 7jl1_A_1 436:LVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKXXGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKC: 535 SecStr :HHHHHHHHHHT SS S EEEE S EETTEE HHHHHHHHHHH -- EEEE GGG S SS EEEEES SHHHHHHHHT STT EE: ExpBur :bbebbeebbeebeebeebebbebbeeeeeeeeeebebeebbebbeebe--eeeebbbbbebbbbbbebeebbbbbbbbbeeebbebbbbbbbbebeebeb: Contact : bbb b bbb queryA 739:FLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAF: 838 :********************************************************** ***********************************: 7jl1_A_1 536:FLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKXXXXXXXENKKLLCRKCKALACYTADVRVIEECHYTVLGDAF: 635 SecStr :EEEES HHHHHHHHHHHHHHHHHHHHHHHGGGS TTHHHHHHHHHHHHHHHHHHHT ------- EEEETTT EEEEGGGB BTTTB BB SHHH: ExpBur :bbbbeeeebbeebeebeeebebbeebbeebeeeeeeebeeebeebbeeeeeeeeeeee-------ebeebbbbbbbbebbebeebebbeeeebbbeeeeb: Contact : b queryA 839:KECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPF: 918 :************* *************************************************************: 7jl1_A_1 636:KECFVSRPHPKPKXXXXXXKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPF: 715 SecStr :HHSB SS S ------ B BSSSS EEEEEETTEEEEEE GGGEEEE SSS EE SSTTT : ExpBur :eebbeeeeebeee------eeeebbbeeeebeeebbeeeeeeeeebbbbebebbbbbbeeeeebebeeebeebebeeeee: Contact : bbb |