[pdbjlvh2]Protein Model on 7bkq_A_1_B

Protein Model on 7bkq_A_1_B_2 (TEMPLATE: 7bkq )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(RIGI_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [640 aa]	Isoform 2 of Interferon-induced helicase C domain-containing protein 1 :IFIH1_MOUSE
2	b		B 2 (X)	polymer(polyribonucleotide)	RNA (5'-R(PUPCPCPAPUPGPCPGPCPAPUPGPAPCP*G)-3')	491K(M) 508K(H) (identity: 0.0 %/35.6 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7bkq_A_1 identity=35.6%

queryA       244:RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG-QKGKVVFFANQIPVYEQQ-KSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 341
                :* ** * * **  *** *** *** *** *   *   ** *  *    ***    *     **     *  *     **  * ** *         *   :
7bkq_A_1       4:RPYQMEVAQPALDGKNIIICLPTGSGKTRVAVYITKDHLDKKKQASESGKVIVLVNKVMLAEQLFRKEFNPYLKK-WYRIIGLSGDTQLKISFPEVVKSY: 102
SecStr          : HHHHHHHGGGGGT    EE  TTS HHHHHHHHHHHHHHHHHHHT    EEEEESSHHHHHHHHHHTHHHHHTT-TS   B  SSS  SS HHHHHHS :    
ExpBur          :eebbeebbebbbeeebbbbbbeeebebeebbbebbbebbeebeeeeeebbbbbbbeeebbbeebeeebbeeebee-ebebbebbeeeeeeeebbebbeee:    

queryA       342:DIIILTPQILVN---NLKKGTIPS--LSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGS--------SGPLPQVIGLTASVGVGDAKNTDEALDYIC: 428
                :* ** * *** *   **  *      ** * * * **** * *   ** **  ** ***             ****  ***** *** **   **   * :
7bkq_A_1     103:DVIISTAQILENSLLNLESGDDDGVQLSDFSLIIIDECHHTNKEAVYNNIMRRYLKQKLRNNDLKKQNKPAIPLPQILGLTASPGVGAAKKQSEAEKHIL: 202
SecStr          :SEEEEEHHHHHHHHHHHHTTS     TTT SEEEEB GGGTTSS HHHHHHHHHHHHHHHHHHHHHH S      EE  EES     S SSHHHHHHHHH:    
ExpBur          :ebbbbbbeebbebbeeeeeeeeeebebbebbbbbbbbbbebeeeeebbbbbbbbbebbbebeeeeeeeeeeeeebbbbbbbeebbbeebeeeeebeebbb:    

queryA       429:KLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDK: 528
                :  ** ***  * *** **  *          *          **      *                        **** ****     *        * :
7bkq_A_1     203:NICANLDAFTIKTVKENLGQLKHQIKXXXXKFVIAXXXXXNPFKEKLLEIMASIQTYCQKSPMS----------DFGTQHYEQWAIQMEKKA----AKDG: 288
SecStr          :HHHHHHT S     SS HHHHHHH  ----     ----- HHHHHHHHHHHHHHHHHT   SS---------- SSSHHHHHHHHHHHHHH----HTTT:    
ExpBur          :ebbbbbbbebbeebeeeeeebeeeee----eeeee-----eebeeebeebbeebbebbebebeb----------eeeeeebbebbeebbeeb----beeb:    
Contact         :                                                              b                b                    

queryA       529:DEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGF------------------------------DEIEQDLTQRFEEKLQELE: 598
                :    * *        ****** ** *    ** **   *  *        *                              **    *   *      * :
7bkq_A_1     289:NRKDRVC------AEHLRKYNEALQINDTIRMIDAYSHLETFYTDEKEKKFAVLNDXXXXXXXXXXXXXXXXXXXXXXXKLDETDEFLMNLFFDNKKMLK: 382
SecStr          : TTTHHH------HHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHHHHH  -----------------------   HHHHHHHHHHHHHHHHHH:    
ExpBur          :eeeebbb------bebbebbbbbbebbeebbbebbbebbeebbebbeebbebbeee-----------------------eeeebbeebbebbeeebeebe:    

queryA       599:SVSRDPSNENPKLEDLCFILQEEYHLNPETIT-ILFVKTRALVDALKNWIEGNPKLS--FLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILI: 695
                :     *     **  *     *           * * ***    **  **  * *      *   * * *       **   **     *   *  * **:
7bkq_A_1     383:KLAENPXXXXEKLIKLRNTILEQFTRSXXSSRGIIFTKTRQSTYALSQWIMENAKFAEVGVKAHHLIGAGHSSEVKPMTQTEQKEVISKFR-TGEINLLI: 481
SecStr          :HHHH  ---- HHHHHHHHHHHHTTT --     EE S SHHHHHHHHHHHH HHHHHTT  EEE     S SSS    HHHHHHHHHHHH-HTS SEEE:    
ExpBur          :eebeee----eebeebeebbbebbeee--eebbbbbbeebebbbbbbebbeeeeebeeeebeebbbbbeeeeeeeeebeeeebeebbeebe-eeebebbb:    

queryA       696:ATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLT-SNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTH---EKFIR: 791
                :** ** ** **  ** ** *                    *   * *       * *  *   ****   * * *         ***  *     **   :
7bkq_A_1     482:ATTVAEEGLDIKECNIVIRYGLXXXXXXXXXXXXXXXXXXSTYVLVTXXXXXXXEREIVNDFREKMMYKAINRVQNMKPEEYAHKILELQVQSILEKKMK: 581
SecStr          :BSSGGGTTS   S S EEEE  ------------------  EEEE ------- HHHHHHHHHHHHHHHHHHHHSS HHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :bbebbeeebebeebebbbebee------------------eeebbbe-------eeeeeeeeeeebbeebbeebbebeeeebeeebeebbeebbeeeeee:    

queryA       792:DSQEKPKPVPDKENK-KLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPHP-KPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKI: 889
                :      *   *      ***  *  * *      ***  *       **     *                 * *    *   **     *    *  **:
7bkq_A_1     582:VKRSIAKQYNDNPSLITLLCKNCSMLVCSGENIHVIEKMHHVNMTPEFKGLYIVRENKXXXXXXXXXXXNGEIIC---KCGQAWGTMMVHKGLDLPCLKI: 678
SecStr          :HHHHHHH     S   EEEETTTTEEEEESSS EEETTTEEE  STTTTTT EEE   -----------  EEE ---TTS EEEEEEE SSSEEEEE G:    
ExpBur          :eeeeeeeeeeeeeeebebbbbbeeeebbbbeebbbbeeeebbbbeeebeeebbebeee-----------ebebbb---ebbbbbbebbeeeeeebbbbeb:    

queryA       890:ESFVVEDIATGVQTLYSKW: 908
                :  ***          * **:
7bkq_A_1     679:RNFVVNFKNNSPKKQYKKW: 697
SecStr          :GGEEE  TT       SSG:    
ExpBur          :eebbbebeeeeebeebeeb:

Protein Model on 7bkq_A_1_B_2 (TEMPLATE: 7bkq )

Input Residue Numbers for Focused Sites