Protein Model on 6kyv_B_1_A_1
(TEMPLATE: 
6kyv
)Protein Model on 6kyv_B_1_A_1
(TEMPLATE: 6kyv
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RIGI_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [672 aa] | Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN | |
| 2 | b | A 1 (A) | polymer(polyribonucleotide) | RNA (5'-R(*GP*GP*UP*AP*GP*AP*CP*GP*CP*UP*UP*CP*GP*GP*CP*GP*UP*UP*UP*GP*CP*C)-3') | 298N 299Q 300I 325S 326G 330E 347T 349Q 353N 379K 380Q 381H 382P 498Q 499I 500Q 507Q 510E 511Q 514V 518K 546R 635K 636T 637R 662T 663G 664R 667T 668N 678Q 697T 698S 700A 720N 750K 830H 853F 858K 874G 875I 886V 888K 906S 907K 908W (identity: 100.0 %/99.3 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6kyv_B_1 identity=99.3% |
queryA 242:KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 341
:****************************************************************************************************:
6kyv_B_1 4:KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 103
SecStr : HHHHHHHHHHHTT EEEE TTS HHHHHHHHHHHHTTSS TT EEEE SSHHHHHHHHHHHHHHHTTTT EEEE STT TTS HHHHHHH :
ExpBur :eeeebbebbbebbeeeebbbbbbebebebeebbbbbbeebbeeeeeeeebbbbbbbeeeebbeebeeebeebbeeeebebebbbeeebeeeebeeebeeb:
Contact : bbb bb b
queryA 342:DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT: 441
:****************************************************************************************************:
6kyv_B_1 104:DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT: 203
SecStr :SEEEE HHHHHHHHHHTSS GGG SEEEEETGGG SSS HHHHHHHHHHHHHHSS EEEEEES TT SHHHHHHHHHHHHHHTT EEE :
ExpBur :bbbbbbbebbbebbeeeebeebeebebbbbbbbbbbeeeeebbebbbebbebeeeeeeeeebbbbbbbbbbbbeebeeeeebbeebbebbbebbbbbbbb:
Contact : b b b bbbb
queryA 442:VKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY: 541
:****************************************************************************************************:
6kyv_B_1 204:VKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY: 303
SecStr : SSHHHHHTTS EEEEEE S HHHHHHHHHHHHHHHHHHHHSTTGGGSSS S TTSHHHHHHHHHHHHHTTS TTSSSHHHHHHHHHHH:
ExpBur :beeeeeebeeebeebebeeeebeebeebebeebbbebbeebbebbeeebeebeeebebeebebeeeebbebbeebbeebbeeeeeeeeebbebbbbbbbb:
Contact : bbb b bb b b
queryA 542:TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD: 641
:*********************************** **************************************************************:
6kyv_B_1 304:TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAXXXDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD: 403
SecStr :HHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHH --- HHHHHHHHHHHHTHHHHHHHHS TTS HHHHHHHHHHHHHHHH TT EEEE SSHHHHH:
ExpBur :bebbeebbbbbebbeebbbebbbeebeebbeebee---eeebeebbeebeebeeebeebbeeeeeebebbeebbebbeebbeeeeebbbbbbbeeeebbe:
Contact : b bbb
queryA 642:ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL: 741
:****************************************************************************************************:
6kyv_B_1 404:ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL: 503
SecStr :HHHHHHHT GGGTT EEEE TTSS S HHHHHHHHTTSSTTSS SEEEE SS S SEEEEES HHHHHHGGGG STT EEEEE:
ExpBur :bbeebbeebeebeebebbbbbeeeeeeeeeebeeeebeeebebbeeeeeebbbbbbeeebeeeebeebebbbbbbbeeebbebbbbbbbbeeeebebbbb:
Contact : bbb bb b bb b b
queryA 742:TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKEC: 841
:***************************************************** *********************************************:
6kyv_B_1 504:TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQXXPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKEC: 603
SecStr :ES HHHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHHT -- S EEEEETTT EEEEGGGEEEETTTEEEE SSSGGGS:
ExpBur :bbeeebbeebeebeebbebbeebbeebeeeeeeebeeebeebbeeebeeeeee--eeeeeeeeebebbbbbbbbebbebeebebbeeeebbbeeeebeee:
Contact : b b
queryA 842:FVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPF: 918
:*****************************************************************************:
6kyv_B_1 604:FVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPF: 680
SecStr :EEEEE SS EETTEEEEEEEEE TTS EEEEEEE SSSEEEEE GGGEEEEETTT EE SSGGG S EE :
ExpBur :beeeebebeeeeeebebebbbbbeeeebebbbbbbbbeeeeebbbbebebbbbbbeeeeebeeeeebeebebeeeee:
Contact : b b bb b b bbb
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[assembly_id:1]
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