Protein Model on 6gpg_C_1_E_1 (TEMPLATE: 6gpg )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(RIGI_HUMAN) C 1 (A) polymer(polypeptide(L)) [651 aa] Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN
2 b E 1 (A) non-polymer(MG) MAGNESIUM ION 298N 381H (identity: 100.0 %/95.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6gpg_C_1 identity=95.0%
queryA       239:SPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIV: 338
                :***************************** **********************************************************************:
6gpg_C_1      28:SPFKPRNYQLELALPAMKGKNTIICAPTGFGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIV: 127
SecStr          :  S   HHHHHHHHHHHTT  EEEE  TTS HHHHHHHHHHHHHHS  TT    EEEE SSHHHHHHHHHHHHHHHGGGT  EEEE GGG TTS HHHHH:    
ExpBur          :eeeeeeebbebbbebbeeeebbbbbbebebebebbbbbbbbebbeeeeeeeebbbbbbbeeeebbeebeeebeebbeeeeeebebbbeeebeeeebeeeb:    
Contact         :                                                           b                                        

queryA       339:ENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASV: 438
                :****************************************************************************************************:
6gpg_C_1     128:ENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASV: 227
SecStr          :HT SEEEE HHHHHHHHHTTSS  GGG SEEEEETGGG SSSSHHHHHHHHHHHHHHSS      EEEEEES     S  SHHHHHHHHHHHHHHTT  E:    
ExpBur          :eebebbbbbbebbbebbeeeebeebeebebbbbbbbbbbeeeeebbebbbebbebeeeeeeeeebbbbbbbbbbbbeebeeeeebbeebbebbbbbbbbb:    
Contact         :                                          b                                                         

queryA       439:IATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKAL: 538
                :*******************************************************       **************************************:
6gpg_C_1     228:IATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLXXXXXXXNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKAL: 327
SecStr          :EE  STTHHHHTTTS   EEEEEE    S  HHHHHHHHHHHHHHHHHHHHT   -------   TTSSHHHHHHHHHHHHHTT   S SHHHHHHHHHH:    
ExpBur          :bbbbeeeeebbeeebeebebeeeebeebeeeebeeebbebbeebbebeeeeeeee-------eeeeeeeebeeebeeebeebbeeeeeeeeebeebbbbb:    

queryA       539:FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRA: 638
                :****************************************************************************************************:
6gpg_C_1     328:FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRA: 427
SecStr          :HHHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHTT   HHHHHHHHHHHHHHHHHHHHHS TT   HHHHHHHHHHHHHHHH TT  EEEE SSHH:    
ExpBur          :bbbbebbeebbbbbebbebbbbbbbbeebeebbeeeeeeeeeebbeebbebbeeeeeebeebbeeeebebebbebbbebbeebbeeeeebebbbbbeeee:    

queryA       639:LVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKC: 738
                :*************************                          *************************************************:
6gpg_C_1     428:LVDALKNWIEGNPKLSFLKPGILTGXXXXXXXXXXXXXXXXXXXXXXXXXXDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKC: 527
SecStr          :HHHHHHHHHHH GGGTT  EEEE  --------------------------  SEEEES  SSS S     SEEEEES    HHHHHHHGGGG STT EE:    
ExpBur          :bbebbbebbeeeeebeebebbeeee--------------------------eeebbbbeeeebbeeeeeebebbbbbbbeeebbebbbbbbbbeeeebeb:    

queryA       739:FLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAF: 838
                :****************************************************************************************************:
6gpg_C_1     528:FLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAF: 627
SecStr          :EEEES HHHHHHHHHHHHHHHHHHHHHHHHHTS HHHHHHHHHHHHHHHHHHHHHH            EEEESSS  EEEEGGG  EETTTEE   SHHH:    
ExpBur          :bbbbbeeebbeebeebeebbebbeebbeebeeeeeeebeeebeeebeeebeeeeeeeeeeeeeeeeebbbbbbbbbbebbebebbbbbeeeebbbeeeeb:    

queryA       839:KECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 922
                :************************************************************************************:
6gpg_C_1     628:KECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 711
SecStr          :HHSEEEEE S     TT EEEEEEEE STTT  EEEEEEEETTEEEEEE GGGEEE  TTT   B   SSTT  S   B  TT :    
ExpBur          :eeebeeeeeeeeeeeeebebebebebeeeebebebbbbbeeeeeebbbbebebbbbbeeeeeebeeeeebeebebeeeebeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123