[pdbjlvh2]Protein Model on 6gkh_A_1_F

Protein Model on 6gkh_A_1_F_1 (TEMPLATE: 6gkh )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(RIGI_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [685 aa]	Interferon-induced helicase C domain-containing protein 1 :IFIH1_MOUSE
2	b		F 1 (A)	non-polymer(MG)	MAGNESIUM ION	372D (identity: 100.0 %/38.4 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:6gkh_A_1 identity=38.4%

queryA       244:RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG-QKGKVVFFANQIPVYEQQ-KSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 341
                :* ** * * **  *** *** *** *** *   *   ** *  *    ***    *     **     *  *     **  * ** *         *   :
6gkh_A_1     310:RPYQMEVAQPALDGKNIIICLPTGSGKTRVAVYITKDHLDKKKQASESGKVIVLVNKVMLAEQLFRKEFNPYLKK-WYRIIGLSGDTQLKISFPEVVKSY: 408
SecStr          : HHHHHHHGGGGSS  EEEE  SSSSHHHHHHHHHHHHHHHHHHTT    EEEEESSSHHHHHHHHTTSHHHHTT-TS  EE  SSS  SS HHHHHTTS:    
ExpBur          :eebbeebbebbbeeeebbbbbebebebbebbbebbebbbeeeeeeeeeeebbbbbebebbbebbeeebbeebbee-ebebebbbebeeeeeebbebbeee:    

queryA       342:DIIILTPQILVN---NLKKGTIPS--LSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGS--------SGPLPQVIGLTASVGVGDAKNTDEALDYIC: 428
                :* ** * *** *   **  *      ** * * * **** * *   ** **  ** ***             ****  ***** *** **   **   * :
6gkh_A_1     409:DVIISTAQILENSLLNLESGDDDGVQLSDFSLIIIDECHHTNKEAVYNNIMRRYLKQKLRNNDLKKQNKPAIPLPQILGLTASPGVGAAKKQSEAEKHIL: 508
SecStr          :SEEEEEHHHHHHHHHHHHHSSS    GGG SEEEEE GGG STT HHHHHHHHHHHHHHHHHHHHTT S      EEEEEES     S SSHHHHHHHHH:    
ExpBur          :bbbbbebeebbebbeeeeeeeeebbebeebbbbbbbbbbebeeebebbbbbbebbebbeebeeeeeeeeeeeeebbbbbbbbbbbbeebeeeeebbebbb:    
Contact         :                                   b                                                                

queryA       429:KLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDK: 528
                :  ** ***  * *** **  *      * * *          **      *                        **** ****     *        * :
6gkh_A_1     509:NICANLDAFTIKTVKENLGQLKHQIKEPCKKFVIADDTRENPFKEKLLEIMASIQTYCQKSPMS----------DFGTQHYEQWAIQMEKKA----AKDG: 594
SecStr          :HHHHTTT S      TTHHHHHHH    B  EEEE     TTTHHHHHHHHHHHHHHHT    S---------- SSSHHHHHHHHHHHHHH----HHHT:    
ExpBur          :ebbbbbbbeebeebeeeeeebeeeeeebeeeebebeeeebeebeebbeebbebbbeebeeebee----------ebeeeebeebbeebbeeb----beee:    

queryA       529:DEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGF------------DEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCF: 616
                :    * *        ****** ** *    ** **   *  *        *            **    *   *      *      *  ** **  *  :
6gkh_A_1     595:NRKDRVC------AEHLRKYNEALQINDTIRMIDAYSHLETFYTDEKEKKFAVLNDXXKSLKLDETDEFLMNLFFDNKKMLKKLAENPKYENEKLIKLRN: 688
SecStr          : TTTHHH------HHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHT --      SHHHHHHHHHHHHHHHHHHHH  STTS HHHHHHHH:    
ExpBur          :eeebbbb------bbbbeebbebbebbeebbbebbbebbeebbeebeebbebbeee--eeeeebebbeebbeebeeeeeebeeebebeebbbebbeebbe:    

queryA       617:ILQEEYHLNPETIT-ILFVKTRALVDALKNWIEGNPKLS--FLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVI: 713
                :   *      *    * * ***    **  **  * *      *   * * *       **   **     *   *  * **** ** ** **  ** **:
6gkh_A_1     689:TILEQFTRSEESSRGIIFTKTRQSTYALSQWIMENAKFAEVGVKAHHLIGAGHSSEVKPMTQTEQKEVISKFR-TGEINLLIATTVAEEGLDIKECNIVI: 787
SecStr          :HHHHHHHHHSS   EEEE S SHHHHHHHHHHHH SHHHHTT  EE        SSS    HHHHHHHHHHHH-TTS SEEEE GGGSS    S   EE :    
ExpBur          :bbeebbeebeeebebbbbbeeebbbebbbebbeeeeebeeeebebebbbbebeeeebeebebeebbebbeebe-ebebbbbbbbebbbbbbebeebbbbb:    

queryA       714:LYEYVGNVIKMIQTRGRGRARGSKCFLLTSN-AGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTH---EKFIRDSQEKPKPVPDKENK-KL: 808
                : *  * * * * * *** **  *   * **   ** * *  *   ****   * * *         ***  *     **         *   *      *:
6gkh_A_1     788:RYGLVTNEIAMVQARGRARADESTYVLVTSSGSGVTEREIVNDFREKMMYKAINRVQNMKPEEYAHKILELQVQSILEKKMKVKRSIAKQYNDNPSLITL: 887
SecStr          : BS    HHHHHHHHT   SSS B  EEEETTSTHHHHHHHHHHHHHHHHHHHHHHHTS HHHHHHHHHHHHHHHHHHHHHHHHTTSSS     TT EEE:    
ExpBur          :bbebbeebbbbbbbbbbbeeeebbbbbbbbeeeebeeebeebeeebebbeebbeebeebeeeebeeebeebbeebbeeeeeeeeeeeeeeeeeeeeebeb:    

queryA       809:LCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPH-PKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSK: 907
                :**  *  * *      ***  *       **     *                 * *    *   **     *    *  **  ***          * *:
6gkh_A_1     888:LCKNCSMLVCSGENIHVIEKMHHVNMTPEFKGLYIVRENXXXXXXXXXXQTNGEIIC---KCGQAWGTMMVHKGLDLPCLKIRNFVVNFKNNSPKKQYKK: 984
SecStr          :EESSS  EEE STTEEEETTTEEEE  HHHHTT EEE  ----------  S EEE ---SSS EEEEEEEETTEEEEEE GGGEEEEESSS      SS:    
ExpBur          :bbbbbeeebbebeebebbeeeebbbeeeebeeebbebee----------eeebebbb---ebbbbbbebbebeebebbbbebeebbbeeeeeeebebbee:    

queryA       908:W: 908
                :*:
6gkh_A_1     985:W: 985
SecStr          :T:    
ExpBur          :b:

Protein Model on 6gkh_A_1_F_1 (TEMPLATE: 6gkh )

Input Residue Numbers for Focused Sites