Protein Model on 6gkh_A_1_B_1
(TEMPLATE: 
6gkh
)Protein Model on 6gkh_A_1_B_1
(TEMPLATE: 6gkh
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RIGI_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [685 aa] | Interferon-induced helicase C domain-containing protein 1 :IFIH1_MOUSE | |
| 2 | b | B 1 (X) | polymer(polyribonucleotide) | RNA (5'-R(P*GP*UP*CP*AP*AP*GP*CP*CP*GP*AP*GP*GP*AP*GP*A)-3') | 379K 380Q(E) 381H(A) 507Q 666K(H) 674T 719G(T) 750K(R) 829C(M) 830H 859R(N) 888K 907K 908W (identity: 50.0 %/38.4 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6gkh_A_1 identity=38.4% |
queryA 244:RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG-QKGKVVFFANQIPVYEQQ-KSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 341
:* ** * * ** *** *** *** *** * * ** * * *** * ** * * ** * ** * * :
6gkh_A_1 310:RPYQMEVAQPALDGKNIIICLPTGSGKTRVAVYITKDHLDKKKQASESGKVIVLVNKVMLAEQLFRKEFNPYLKK-WYRIIGLSGDTQLKISFPEVVKSY: 408
SecStr : HHHHHHHGGGGSS EEEE SSSSHHHHHHHHHHHHHHHHHHTT EEEEESSSHHHHHHHHTTSHHHHTT-TS EE SSS SS HHHHHTTS:
ExpBur :eebbeebbebbbeeeebbbbbebebebbebbbebbebbbeeeeeeeeeeebbbbbebebbbebbeeebbeebbee-ebebebbbebeeeeeebbebbeee:
queryA 342:DIIILTPQILVN---NLKKGTIPS--LSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGS--------SGPLPQVIGLTASVGVGDAKNTDEALDYIC: 428
:* ** * *** * ** * ** * * * **** * * ** ** ** *** **** ***** *** ** ** * :
6gkh_A_1 409:DVIISTAQILENSLLNLESGDDDGVQLSDFSLIIIDECHHTNKEAVYNNIMRRYLKQKLRNNDLKKQNKPAIPLPQILGLTASPGVGAAKKQSEAEKHIL: 508
SecStr :SEEEEEHHHHHHHHHHHHHSSS GGG SEEEEE GGG STT HHHHHHHHHHHHHHHHHHHHTT S EEEEEES S SSHHHHHHHHH:
ExpBur :bbbbbebeebbebbeeeeeeeeebbebeebbbbbbbbbbebeeebebbbbbbebbebbeebeeeeeeeeeeeeebbbbbbbbbbbbeebeeeeebbebbb:
Contact : bbb
queryA 429:KLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDK: 528
: ** *** * *** ** * * * * ** * **** **** * * :
6gkh_A_1 509:NICANLDAFTIKTVKENLGQLKHQIKEPCKKFVIADDTRENPFKEKLLEIMASIQTYCQKSPMS----------DFGTQHYEQWAIQMEKKA----AKDG: 594
SecStr :HHHHTTT S TTHHHHHHH B EEEE TTTHHHHHHHHHHHHHHHT S---------- SSSHHHHHHHHHHHHHH----HHHT:
ExpBur :ebbbbbbbeebeebeeeeeebeeeeeebeeeebebeeeebeebeebbeebbebbbeebeeebee----------ebeeeebeebbeebbeeb----beee:
Contact : b
queryA 529:DEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGF------------DEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCF: 616
: * * ****** ** * ** ** * * * ** * * * * ** ** * :
6gkh_A_1 595:NRKDRVC------AEHLRKYNEALQINDTIRMIDAYSHLETFYTDEKEKKFAVLNDXXKSLKLDETDEFLMNLFFDNKKMLKKLAENPKYENEKLIKLRN: 688
SecStr : TTTHHH------HHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHT -- SHHHHHHHHHHHHHHHHHHHH STTS HHHHHHHH:
ExpBur :eeebbbb------bbbbeebbebbebbeebbbebbbebbeebbeebeebbebbeee--eeeeebebbeebbeebeeeeeebeeebebeebbbebbeebbe:
queryA 617:ILQEEYHLNPETIT-ILFVKTRALVDALKNWIEGNPKLS--FLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVI: 713
: * * * * *** ** ** * * * * * * ** ** * * * **** ** ** ** ** **:
6gkh_A_1 689:TILEQFTRSEESSRGIIFTKTRQSTYALSQWIMENAKFAEVGVKAHHLIGAGHSSEVKPMTQTEQKEVISKFR-TGEINLLIATTVAEEGLDIKECNIVI: 787
SecStr :HHHHHHHHHSS EEEE S SHHHHHHHHHHHH SHHHHTT EE SSS HHHHHHHHHHHH-TTS SEEEE GGGSS S EE :
ExpBur :bbeebbeebeeebebbbbbeeebbbebbbebbeeeeebeeeebebebbbbebeeeebeebebeebbebbeebe-ebebbbbbbbebbbbbbebeebbbbb:
Contact : b b
queryA 714:LYEYVGNVIKMIQTRGRGRARGSKCFLLTSN-AGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTH---EKFIRDSQEKPKPVPDKENK-KL: 808
: * * * * * * *** ** * * ** ** * * * **** * * * *** * ** * * *:
6gkh_A_1 788:RYGLVTNEIAMVQARGRARADESTYVLVTSSGSGVTEREIVNDFREKMMYKAINRVQNMKPEEYAHKILELQVQSILEKKMKVKRSIAKQYNDNPSLITL: 887
SecStr : BS HHHHHHHHT SSS B EEEETTSTHHHHHHHHHHHHHHHHHHHHHHHTS HHHHHHHHHHHHHHHHHHHHHHHHTTSSS TT EEE:
ExpBur :bbebbeebbbbbbbbbbbeeeebbbbbbbbeeeebeeebeebeeebebbeebbeebeebeeeebeeebeebbeebbeeeeeeeeeeeeeeeeeeeeebeb:
Contact : b b
queryA 809:LCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPH-PKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSK: 907
:** * * * *** * ** * * * * ** * * ** *** * *:
6gkh_A_1 888:LCKNCSMLVCSGENIHVIEKMHHVNMTPEFKGLYIVRENXXXXXXXXXXQTNGEIIC---KCGQAWGTMMVHKGLDLPCLKIRNFVVNFKNNSPKKQYKK: 984
SecStr :EESSS EEE STTEEEETTTEEEE HHHHTT EEE ---------- S EEE ---SSS EEEEEEEETTEEEEEE GGGEEEEESSS SS:
ExpBur :bbbbbeeebbebeebebbeeeebbbeeeebeeebbebee----------eeebebbb---ebbbbbbebbebeebebbbbebeebbbeeeeeeebebbee:
Contact : bb b b b
queryA 908:W: 908
:*:
6gkh_A_1 985:W: 985
SecStr :T:
ExpBur :b:
Contact :b
|
[assembly_id:1]
[help]