Protein Model on 5jc7_B_1_C_1
(TEMPLATE: 
5jc7
)Protein Model on 5jc7_B_1_C_1
(TEMPLATE: 5jc7
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RIGI_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [647 aa] | Melanoma differentiation associated protein-5 :D9N195_CHICK | |
| 2 | b | C 1 (X) | polymer(polyribonucleotide) | RNA (5'-R(P*GP*GP*AP*CP*GP*UP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP*AP*CP*GP*UP*CP*CP*CP*C)-3') | 298N 299Q(K) 300I(V) 301P 325S 326G 347T 349Q 350I 353N 510E 511Q 514V(I) 515T(R) 635K 636T 637R 662T(I) 663G 664R(A) 668N(S) 669Q(E) 675L(Q) 678Q 697T 698S(T) 699V 794Q(R) 827E 906S(K) (identity: 60.0 %/36.0 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5jc7_B_1 identity=36.0% |
queryA 244:RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL-KKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENND: 342
:* ** * * ** * * *** *** *** * * ** ** *** * * ** * * * * * ** * *:
5jc7_B_1 9:RDYQMEVAKPALNGENIIICLPTGSGKTRVAVYITKDHLDKKRKASEQGKVIVLVNKVPLVEQHLRKEFNPFLKHWYQVIGLSGDSELKISFPEVVKRYD: 108
SecStr : HHHHHHHHHHHTT EEEE TTS HHHHHHHHHHHHHHHHHTTT EEEEESSHHHHHHHHHHTHHHHHTTTS EEE SS SS HHHHHHH S:
ExpBur :eebbebbbebbbeeebbbbbbeeebebbebbbebbeebbeeeeeeeeebbbbbbbeeebbbebbbeebbeebbeeebebbbbbeeeeeeeebeebbeebe:
Contact : bbbb bb
queryA 343:IIILTPQILVNNLKKGTIPS----LSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSG--------PLPQVIGLTASVGVGDAKNTDEALDYICKL: 430
: ** * *** * * ** * * * * ** * * ** ** ** * * ** ***** *** * * * * :
5jc7_B_1 109:VIICTAQILENSLLNXXXXXESVRLSDFSLIIIDQCHHTQKEGVYNNIMRRYLKEKIKNRXXXXXXXXXXPQPQILGLTASPGVGGARSNSKAEEHILKI: 208
SecStr :EEEEEHHHHHHHHH ----- GGG SEEEEETGGG STT HHHHHHHHHHHHHHH ---------- EEEEEES TT SHHHHHHHHHHH:
ExpBur :bbbbbbebbbebbee-----eebebeebbbbbbbbbbebeeeeebbbbbbebbeeeeeee----------eebbbbbbbebbbbeebeeeeebbebbbeb:
Contact : b bb b
queryA 431:CASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDE: 530
:** *** * *** * * * * * * * * * * *** * **** :
5jc7_B_1 209:CANLDACRIMTVKEHASQLKNQVKEPFKKTVIADDKRRDPFRERIIEIMQDIQKYCQLYPKS----------EFGSQPYEQWVIREERRA----AKEEKR: 294
SecStr :HHHTT SEEEE TTHHHHHHHS EEEE B S HHHHHHHHHHHHHHHHHT SS---------- SSSHHHHHHHHHHHHHH----HHTT H:
ExpBur :bbbbbbeebbbbeeeeeebeeebeebeeeeeebeeeeeebbeeebbebbeebbebbebeeee----------ebbbeebeebbeebbeeb----beeeeb:
Contact : bb bb
queryA 531:ESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVR--------------AAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCF: 616
: * * ** ****** * ** ** * * ** * * * * * * * ** * :
5jc7_B_1 295:KERVC------AEHLKKYNDALQINDTIRMVDAYNHLNNFYKELKRRKTAESXXXXXPLVSKQDETDEFLMRLFHAKKKQLKELARKPEYDNEKLMKLRN: 388
SecStr :HHHHH------HHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHS ----- S S HHHHHHHHHHHHHHHHHHHHHT GGGS HHHHHHHH:
ExpBur :eebbb------bebbbbbbbbbebbeebbbebbbeebbebbeebeebbeeee-----eeeebeeebbeebbebbeeeeeebeebbeeeeebbbbbeebee:
queryA 617:ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLS--FLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL: 714
: * ** * * * *** ** ** *** * * * * ** * * * * * **** ** ** ** ** ** :
5jc7_B_1 389:TLMEEFTKTEEPRGIIFTKTRQSALALYHWIMDNPKFEEVGIKAHFLIGAGHNSETKPMTQNEQREVIDKFRG-GSINLLIATTVAEEGLDIKECNIVIR: 487
SecStr :HHHHHTTSSSS EEEE SSHHHHHHHHHHHHS HHHHHHT EEEE SSSSS HHHHHHHHHHHHH-TS EEEE GGGSSSS SEEEE:
ExpBur :bbeebbeeeeebbbbbbbeebebbebbbebbeeeeebeeeebebebbbbeeeeeebeebeeeebeebbeebee-eebbbbbbbeebbbebebeebbbbbb:
Contact : bbb bbb bb b b bbb
queryA 715:YEYVGNVIKMIQTRGRGRARGSKCFLL-TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTH---EKFIRDSQEKPKPVPDKENK-KLL: 809
:* * * * * * *** ** * * * * * * * * ** * * * ** * ** *:
5jc7_B_1 488:YGLVTNEIAMVQARGRARADESTYALVASSGSGAVEREDVNIFRENMMYKAIRRVQEMPPEEYLNKIQDFQLQSIVEKQMKAKRDQRXXXXXXXXXITFL: 587
SecStr :SS HHHHHHHHHT STT EEEE BTTTSHHHHHHHHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHTT --------- EEE:
ExpBur :bebbeebbbbbbbbbbbebeebbbbbbbbeeeebbeebeebeebbebbeebbeebeebeeeebeeebeebbeebbeeeeeeeeeeee---------ebbb:
Contact : b
queryA 810:CRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRP-HPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVE-DIATGVQTLYSK: 907
:* * * * * *** * * * * * * ** * * ** *** *:
5jc7_B_1 588:CKNCHKLICSGEDIQVIENMHHVSVKKDFQHLYHKREXXXXXXXXXXXXXXXEIIC--KDCGQVWGNMMVYRGLDLPCLKIRNFVVAFEXXXTTKEIFKK: 685
SecStr :ETTT EEEESTTEEEETTTEEEE SSTTTTEEE --------------- EEE--TTT EEEEEEESSS EEEEE GGGEEEE --- EE SS:
ExpBur :bbbebeebbebebbebbeeeebbbeeeebeeebbebe---------------ebbb--eebbbbbbeebeeeeeebbbbebebbbbbee---eeeebbee:
Contact : b b
queryA 908:WKDF: 911
:* :
5jc7_B_1 686:WGEL: 689
SecStr :GGGS:
ExpBur :beeb:
|
[assembly_id:1]
[help]