Protein Model on 5jc7_A_1_C_1
(TEMPLATE: 
5jc7
)Protein Model on 5jc7_A_1_C_1
(TEMPLATE: 5jc7
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RIGI_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [641 aa] | Melanoma differentiation associated protein-5 :D9N195_CHICK | |
| 2 | b | C 1 (X) | polymer(polyribonucleotide) | RNA (5'-R(P*GP*GP*AP*CP*GP*UP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP*AP*CP*GP*UP*CP*CP*CP*C)-3') | 376N(H) 378S(Q) 379K 380Q(E) 381H(G) 491K 507Q 508K(P) 511Q 666K(H) 718V 719G(T) 720N 750K(R) 791R(K) 829C(M) 830H 888K 907K 909K(G) (identity: 45.0 %/36.0 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5jc7_A_1 identity=36.0% |
queryA 244:RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL-KKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENND: 342
:* ** * * ** * * *** *** *** * * ** ** *** * * ** * * * * * ** * *:
5jc7_A_1 9:RDYQMEVAKPALNGENIIICLPTGSGKTRVAVYITKDHLDKKRKASEQGKVIVLVNKVPLVEQHLRKEFNPFLKHWYQVIGLSGDSELKISFPEVVKRYD: 108
SecStr : HHHHHHHHHHHTT EEEE TTS HHHHHHHHHHHHHHHHHTTT EEEEESSHHHHHHHHHHTHHHHHTTTS EEE SS SS HHHHHHH S:
ExpBur :eebbebbbebbbeeebbbbbbeeebebbebbbebbeebbeeeeeeeeebbbbbbbeeebbbebbbeebbeebbeeebebbbbbeeeeeeeebeebbeebe:
queryA 343:IIILTPQILVNNLKKGTIPS----LSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSG--------PLPQVIGLTASVGVGDAKNTDEALDYICKL: 430
: ** * *** * * ** * * * * ** * * ** ** ** * * ** ***** *** * * * * :
5jc7_A_1 109:VIICTAQILENSLLNXXXXXESVRLSDFSLIIIDQCHHTQKEGVYNNIMRRYLKEKIKNRXXXXXXXXXXPQPQILGLTASPGVGGARSNSKAEEHILKI: 208
SecStr :EEEEEHHHHHHHHH ----- GGG SEEEEETGGG STT HHHHHHHHHHHHHHH ---------- EEEEEES TT SHHHHHHHHHHH:
ExpBur :bbbbbbebbbebbee-----eebebeebbbbbbbbbbebeeeeebbbbbbebbeeeeeee----------eebbbbbbbebbbbeebeeeeebbebbbeb:
Contact : b bbbb
queryA 431:CASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDE: 530
:** *** * *** * * * * * * * * * * *** * **** :
5jc7_A_1 209:CANLDACRIMTVKEHASQLKNQVKEPFKKTVIADDKRRDPFRERIIEIMQDIQKYCQLYPKS----------EFGSQPYEQWVIREERRA----AKEEKR: 294
SecStr :HHHTT SEEEE TTHHHHHHHS EEEE B S HHHHHHHHHHHHHHHHHT SS---------- SSSHHHHHHHHHHHHHH----HHTT H:
ExpBur :bbbbbbeebbbbeeeeeebeeebeebeeeeeebeeeeeebbeeebbebbeebbebbebeeee----------ebbbeebeebbeebbeeb----beeeeb:
Contact : b bb b
queryA 531:ESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVR--------------AAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCF: 616
: * * ** ****** * ** ** * * ** * * * * * * * ** * :
5jc7_A_1 295:KERVC------AEHLKKYNDALQINDTIRMVDAYNHLNNFYKELKRRKTAESXXXXXXXXSKQDETDEFLMRLFHAKKKQLKELARKPEYDNEKLMKLRN: 388
SecStr :HHHHH------HHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHS -------- HHHHHHHHHHHHHHHHHHHHHT GGGS HHHHHHHH:
ExpBur :eebbb------bebbbbbbbbbebbeebbbebbbeebbebbeebeebbeeee--------ebeeebbeebbebbeeeeeebeebbeeeeeebbbbeebee:
queryA 617:ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLS--FLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL: 714
: * ** * * * *** ** ** *** * * * * ** * * * * * **** ** ** ** ** ** :
5jc7_A_1 389:TLMEEFTKTEEPRGIIFTKTRQSALALYHWIMDNPKFEEVGIKAHFLIGAGHNSETKPMTQNEQREVIDKFRG-GSINLLIATTVAEEGLDIKECNIVIR: 487
SecStr :HHHHHTTSSSS EEEE SSHHHHHHHHHHHHS HHHHHHT EEEE SSSSS HHHHHHHHHHHHH-TS EEEE GGGSSSS SEEEE:
ExpBur :bbeebbeeeeebbbbbbbeebebbebbeebbeeeeebeeeebebebbbbeeeeeebeebeeeebeebbeebee-eebbbbbbbebbbbebebeebbbbbb:
Contact : b
queryA 715:YEYVGNVIKMIQTRGRGRARGSKCFLL-TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTH---EKFIRDSQEKPKPVPDKENK-KLL: 809
:* * * * * * *** ** * * * * * * * * ** * * * ** * ** *:
5jc7_A_1 488:YGLVTNEIAMVQARGRARADESTYALVASSGSGAVEREDVNIFRENMMYKAIRRVQEMPPEEYLNKIQDFQLQSIVEKQMKAKRDQRXXXXXXXXXITFL: 587
SecStr :SS HHHHHHHHHT STT EEEE BTTTSHHHHHHHHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHTT --------- EEE:
ExpBur :bebbeebbbbbbbbbbbeeeebbbbbbbbeeeebbeebeebeebbebbeebbeebeebeeeebeeebeebbeebbeeeeeeeeeeee---------ebbb:
Contact : bbb b b
queryA 810:CRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRP-HPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVE-DIATGVQTLYSK: 907
:* * * * * *** * * * * * * ** * * ** *** *:
5jc7_A_1 588:CKNCHKLICSGEDIQVIENMHHVSVKKDFQHLYHKREXXXXXXXXXXXXXXXEIIC--KDCGQVWGNMMVYRGLDLPCLKIRNFVVAFEXXXXTKEIFKK: 685
SecStr :ETTT EEEESTTEEEETTTEEEE SSTTTTEEE --------------- EEE--TTT EEEEEEESSS EEEEE GGGEEEE ---- EE SS:
ExpBur :bbbebeebbebebbebbeeeebbbeeeebeeebbebe---------------ebbb--eebbbebbeebeeeeeebbbbebebbbbbee----eeebbee:
Contact : bb b b
queryA 908:WKDF: 911
:* :
5jc7_A_1 686:WGEL: 689
SecStr :GGGS:
ExpBur :beeb:
Contact : b
|
[assembly_id:1]
[help]