Protein Model on 5jc3_A_1_C_1
(TEMPLATE: 
5jc3
)Protein Model on 5jc3_A_1_C_1
(TEMPLATE: 5jc3
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RIGI_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [668 aa] | Melanoma differentiation associated protein-5 :D9N195_CHICK | |
| 2 | b | C 1 (Y) | polymer(polyribonucleotide) | RNA (5'-R(P*GP*GP*UP*AP*CP*GP*UP*AP*CP*C)-3') | 298N 299Q(K) 300I(V) 301P 325S 326G 327A(D) 347T 349Q 353N 510E 511Q 514V(I) 518K(R) 635K 636T 637R 662T(I) 663G 664R(A) 665G 668N(S) 669Q(E) 675L(Q) 678Q 697T 698S(T) 699V 799P(R) 906S(K) (identity: 56.7 %/37.2 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5jc3_A_1 identity=37.2% |
queryA 244:RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL-KKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENND: 342
:* ** * * ** * * *** *** *** * * ** ** *** * * ** * * * * * ** * *:
5jc3_A_1 9:RDYQMEVAKPALNGENIIICLPTGSGKTRVAVYITKDHLDKKRKASEQGKVIVLVNKVPLVEQHLRKEFNPFLKHWYQVIGLSGDSELKISFPEVVKRYD: 108
SecStr : HHHHHHHHHHHTT EEEE TTS HHHHHHHHHHHHHHHHHHTT EEEEESSTHHHHHHHHHTHHHHHTTTS EEEE SSS SS HHHHHHH S:
ExpBur :eebbebbbebbbeeebbbbbbeeebebbebbbebbbebbeeeeeeeeebbbbbbbeeeebbebbbeebbeebbeeebebbebbeeeeeeeebeebbeebe:
Contact : bbbb bbb
queryA 343:IIILTPQILVNNLKKGT----IPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSG--------PLPQVIGLTASVGVGDAKNTDEALDYICKL: 430
: ** * *** * * * ** * * * * ** * * ** ** ** * * ** ***** *** * * * * :
5jc3_A_1 109:VIICTAQILENSLLNATEXXESVRLSDFSLIIIDQCHHTQKEGVYNNIMRRYLKEKIKNRKQAKEXXXLIPQPQILGLTASPGVGGARSNSKAEEHILKI: 208
SecStr :EEEEEHHHHHHHHH S -- GGG SEEEEETGGG STT HHHHHHHHHHHHHHHHHHHHH --- EEEEEES TT SSHHHHHHHHHHH:
ExpBur :bbbbbbebbbebbeeeee--eebebeebbbbbbbbbbebeeeeebbbbbbebbeeeeeeeeeeee---eeeebbbbbbbbbbbbeebeeeeebbebbbeb:
Contact : b b b
queryA 431:CASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDE: 530
:** *** * *** * * * * * * * * * * *** * **** :
5jc3_A_1 209:CANLDACRIMTVKEHASQLKNQVKEPFKKTVIADDKRRDPFRERIIEIMQDIQKYCQLYPKS----------EFGSQPYEQWVIREERRA----AKEEKR: 294
SecStr :HHHTT SEEEE TTHHHHHHHS EEEEEEE S HHHHHHHHHHHHHHHHHT SS---------- TTSHHHHHHHHHHHHHH----HHTT H:
ExpBur :bbbbbbeebbebeeeeeebeeebeebeeeeeebeeeeebebeeebbebbeebbebbebeeee----------ebbeeebeebbeebbeeb----beeeeb:
Contact : bb b b
queryA 531:ESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVR--------------AAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCF: 616
: * * ** ****** * ** ** * * ** * * * * * * * ** * :
5jc3_A_1 295:KERVC------AEHLKKYNDALQINDTIRMVDAYNHLNNFYKELKRRKTAESDDDXXXXXSKQDETDEFLMRLFHAKKKQLKELARKPEYDNEKLMKLRN: 388
SecStr :HHHHH------HHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHS SS ----- HHHHHHHHHHHHHHHHHHHHTT GGGS HHHHHHHH:
ExpBur :eebbb------bebbbbbbbbbebbeebbbebbbebbbebbeebebbbeeeeeee-----ebeeebbeebeebbeebbeebeebbeeeeebbebbeebee:
queryA 617:ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLS--FLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL: 714
: * ** * * * *** ** ** *** * * * * ** * * * * * **** ** ** ** ** ** :
5jc3_A_1 389:TLMEEFTKTEEPRGIIFTKTRQSALALYHWIMDNPKFEEVGIKAHFLIGAGHNSETKPMTQNEQREVIDKFRG-GSINLLIATTVAEEGLDIKECNIVIR: 487
SecStr :HHHHHHTTSSS EEEE S HHHHHHHHHHHHS HHHHHTT EEEE S SSS HHHHHHHHHHHHH-TS EEEE GGGTSSS SEEEE:
ExpBur :bbeebbeeeeebbbbbbbeebebbebbbebbeeeeebeeeebebeebbbeeeeeeeeebeeeebeebbeebee-eebbbbbbbebbbbebebeebbbbbb:
Contact : bbb bbbb bb b b bbb
queryA 715:YEYVGNVIKMIQTRGRGRARGSKCFLL-TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKK------: 807
:* * * * * * *** ** * * * * * * * * ** * * * ** * * * * * * * :
5jc3_A_1 488:YGLVTNEIAMVQARGRARADESTYALVASSGSGAVEREDVNIFRENMMYKAIRRVQEMPPEEYLNKIQDFQLQS--IVEKQMKAKRDQRKTXXKNPSLIT: 585
SecStr :ES HHHHHHHHHH STT EEEEEEEGGGTHHHHHHHHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHH--HHHHHHHHHHHHHT --- TTSEE:
ExpBur :bebbeebbbbbbbbbbbeeeebbbbbbbbeeeebbeebeebeebbebbeebbeebeebeeeebeeebeebbeeb--beeeeeeeeeeeeee---eeeebb:
Contact : b
queryA 808:LLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPH-PKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVV--EDIATGVQTL: 904
: ** * * * * *** * * * * * * ** * * ** *** ** :
5jc3_A_1 586:FLCKNCHKLICSGEDIQVIENMHHVSVKKDFQHLYHKRENXXXXXXXXXYQTNVEIIC--KDCGQVWGNMMVYRGLDLPCLKIRNFVVAFEDXXX-TKEI: 682
SecStr :EEETTT EEEEGGGEEEETTTEEEE TT GGGEEEE --------- S EEEE--TTT EEEEEEEETTEEEEEE GGGEEEEE ---- EE :
ExpBur :bbbbbebbebbebebbebbeeeebbbeeeebeebbbebee---------eeeeebbbb--eebbbbbbbbbeeeeeeebbbebebbbbbbee----eeeb:
queryA 905:YSKWKDF: 911
: ** :
5jc3_A_1 683:FKKWGEL: 689
SecStr : SSGGGS:
ExpBur :beebeeb:
Contact : b
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[assembly_id:1]
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