Protein Model on 5jaj_A_1_B_1
(TEMPLATE: 
5jaj
)Protein Model on 5jaj_A_1_B_1
(TEMPLATE: 5jaj
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RIGI_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [653 aa] | LGP2 :G0YYQ5_CHICK | |
| 2 | b | B 1 (X) | polymer(polyribonucleotide) | RNA (5'-R(P*GP*GP*UP*AP*CP*GP*UP*AP*CP*CP*C)-3') | 379K 380Q(E) 381H(A) 385M(K) 508K(V) 511Q 512W(R) 666K(H) 667T(S) 668N 718V(M) 720N 746G(R) 750K(R) 829C(M) 830H 848P(F) 856F(W) 875I(M) 886V(I) 888K(S) 889I 890E(K) 907K 908W 909K(S) (identity: 30.8 %/34.4 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5jaj_A_1 identity=34.4% |
queryA 245:NYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-KVVFFANQIPVYEQQKSVFSKYFE--RHGYRVTGISGATAENVPVEQIVENN: 341
: **** ** * * * *** *** * ** * * * * * * * * ** ** * :
5jaj_A_1 12:GYQLEAVAPALRGRNSIVWLPTGAGKTRAAVHVCRRHL----EGRRGGRVAVLVNKVHLVQQH---LEKEFHVLRDAFKVTAVSGDSSHKCFFGQLAKGS: 104
SecStr :HHHHHHHHHHHTT EEEE TTS HHHHHHHHHHHHH----HTSSS EEEEESSHHHHHHH---HHHTGGGGGGTS EEEE TTTTTSS HHHHHHT :
ExpBur :eebeebbebbeeeebbbbbbeeebebbebbbebbbebb----eeeeebbbbbbbeeebbbebb---beebbeebeeebebbebbeeeeeeeebbeebeeb:
queryA 342:DIIILTPQILVNNLKKGTIPS---LSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASV: 438
:* * * *** * * * * * * **** * * ** ** ** ** * *** ***** * * * * ** ** *:
5jaj_A_1 105:DVVICTAQILQNALLSGEEEARVELTDFSLLVIDECHHTQKEAVYNKIMLSYLQKKLSGQR-DLPQILGLTASPGTGGETSFEGAVEHILQICANLDTEV: 203
SecStr :SEEEEEHHHHHHHHH STTT GGG SEEEETTGGG STTSHHHHHHHHHHHHHHTT - EEEEEES TT SHHHHHHHHHHHHHHTT SE:
ExpBur :ebbbbbbebbbebbebeeeebebebeebbbbbbbbbbebbeeeebbebbbebbeeeeeeee-ebbbbbbbbbbbbbeeeeeeebbbebbbebbbbbbbee:
Contact : bbb b
queryA 439:IATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKAL: 538
:** * * * * * * * * ** **** *** ** * * * :
5jaj_A_1 204:IASAQXXXXXXXXXXXQPTKQYDLCQEREQDPFGQRLKKIM-------AQIQEHMEMPELPQN--FGTQVYEQRIV---------ELENRAAE-RFCRKT: 284
SecStr :EE ----------- EEEEEEE S HHHHHHHHHH-------HHHHHHHT TT -- SSHHHHHHHH---------HHHHHHHH-TT HHH:
ExpBur :bbbee-----------eeeeeebebeebeebebbeebeebb-------eebbeebeeeebeee--beeeebbeebe---------ebbeebbe-eeeeeb:
Contact : b bb
queryA 539:FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRA: 638
: *** ***** * ** ** * * * * * *** * * *** * * **** * * *** :
5jaj_A_1 285:RVCALHLRRYNDALLINDTVRMMDAFQCLQQFYADXXXXK-DPTERFLATTFEENRATLQALAGDQRYENPRLSKLEEILQEHFQXXGSSRGIVFTKTRQ: 383
SecStr :HHHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHH ---- - HHHHHHHHHHHHHHHHHHHHHT GGG HHHHHHHHHHHHH -- EEEE SSHH:
ExpBur :bbbbebbeebbbbbebbeebbbebbbebbeeeeee----e-eebeeebeebbeebeeebeebbeeeebebebbeebbebbeeebe--eebbbbbbbeeee:
queryA 639:LVDALKNWIEGNPKL--SFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGS: 736
: * * * *** * ** *** * * * * * **** ** ** ** * * * * * * ** ** *:
5jaj_A_1 384:SAHSLLSWLQDTAGLCGQHIRAAVLTGSGHSNQAKGMTQNEQQDVITLFR-YGELNLLFSTSVAEEGLDIPECNIVVRYGLMTNEIAMVQAQGRARAQNS: 482
SecStr :HHHHHHHHHHT TTTTTS EEEE S SS HHHHHHHHHHHH-TTSS EEEE GGGSSS TT EEEEES HHHHHHHHTT STT :
ExpBur :bbebbbebbeebeebeebebebbbbbbeeeeeebeebbbeebbebbeebb-ebebbbbbbbebbbbbbebeebebbbbbebebebbbbbbbebbbeeeeb:
Contact : bbb b b
queryA 737:KCFLLT-SNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHE------KFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEEC: 829
: * * ** * * * * * * ** * * * * ** * * * * * * :
5jaj_A_1 483:MYSVLAKANSREVYREQLNESLVGLMERAIRAVQAMPERKYRLKIVELQRNAVLSWQVKEARSSERRQLHDPD--DVYFHCVNCNVAVCRGSDIRTVEAM: 580
SecStr :EEEEEEETT HHHHHHHHHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS GG--G EEEETTT EEEEGGGEEEETTT:
ExpBur :bbbbbbbeebeebeebeebeebbebbeebbeebeebeeeebeeebeebbeebbeeeeeeeeeeeeeeeebeee--ebebbbbbbeeebbebbbbbbbeee:
Contact : b b b
queryA 830:HYTVLGDAFKECFV---SRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHF: 913
:* * * * * * * * ** * * * *** * ** *:
5jaj_A_1 581:HHVNINPNFRFYYTVSSGKIHFE-RTFRDWEPGCRIVCS--ECRQEWGMEMIYRNVTLPILSIKNFVV--VTPDEKKKYKKWSTVTF: 662
SecStr :EEEE TTGGGTEEEEEEE S-S SSEEEEEEEEET--TT EEEEEEEETTEEEEEE GGGEEE--E SS EE S GGG SS:
ExpBur :ebbbeeeebeeebeeeeeebeee-eeeeebebbbebbbe--eeebebeebbebeebebbbbebebbbb--bbeeeeebbeebeebbb:
Contact :b b b b b bbb bbb
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[assembly_id:1]
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