[pdbjlvh2]Protein Model on 5f9h_E_1_U

Protein Model on 5f9h_E_1_U_1 (TEMPLATE: 5f9h )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(RIGI_HUMAN)	E 1 (E)	polymer(polypeptide(L)) [638 aa]	Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN
2	b		U 1 (E)	non-polymer(MG)	MAGNESIUM ION	376N (identity: 100.0 %/93.7 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5f9h_E_1 identity=93.7%

queryA       242:KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 341
                :****************************************************************************************************:
5f9h_E_1      12:KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 111
SecStr          :   HHHHHHHHHHHTT  EEEE  TTS HHHHHHHHHHHHHHTS TT    EEEE SSHHHHHHHHHHHHHHHTTTT  EEEE TTT TTS HHHHHHT :    
ExpBur          :eeeebbebbbebbeeeebbbbbbebebeeeebbbbbbeebbeebeeeeebbbbbbbeeeebbeebeeebeeebeebebebebbbeeebeeeebeeebeeb:    

queryA       342:DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT: 441
                :****************************************************************************************************:
5f9h_E_1     112:DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT: 211
SecStr          :SEEEE HHHHHHHHHHTSS  GGG SEEEEETGGG STT HHHHHHHHHHHHHHSS      EEEEEES    TT SSHHHHHHHHHHHHHHTT SEEE :    
ExpBur          :bbbbbbbebbbebbeeeebeebeebebbbbbbbbebeeeeebbebbbebbebeeeeeeeeebbbbbbbbbbbbeebeeeeebbeebbebbbebbbbbbbe:    
Contact         :                                  b                                                                 

queryA       442:VKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY: 541
                :************************** **********************           ****************************************:
5f9h_E_1     212:VKHNLEELEQVVYKPQKFFRKVESRIXDKFKYIIAQLMRDTESLAKRICXXXXXXXXXXXREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY: 311
SecStr          :  TTHHHHTTTS   EEEEEE     - HHHHHHHHHHHHHHHHHHHH -----------  TTSHHHHHHHHHHHHHHHH   SSSHHHHHHHHHHHHH:    
ExpBur          :beeeeeebeebbeebebeeeebeebe-eebeebbeebbeebeebbeeee-----------eeeeeeebeeebeeeebebbeeeeeeeeebbeebbbbbbb:    

queryA       542:TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD: 641
                :*********************************    ***************************************************************:
5f9h_E_1     312:TSHLRKYNDALIISEHARMKDALDYLKDFFSNVXXXXFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD: 411
SecStr          :HHHHHHHHHHHHHHHHS HHHHHHHHHHHHH  ----  SHHHHHHHHHHHHHHHHHHHHT GGG  HHHHHHHHHHHHHHHH TT  EEEE SSHHHHH:    
ExpBur          :bebbeebbbbbebbebbbbebbbeebeebbeee----eeeebbebbeebeebeeebeebbeeeebebebbebbbebbeebbeeeeebebbbbbeeeebbe:    

queryA       642:ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL: 741
                :**********************                         *****************************************************:
5f9h_E_1     412:ALKNWIEGNPKLSFLKPGILTGXXXXXXXXXXXXXXXXXXXXXXXXXGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL: 511
SecStr          :HHHHHHHT GGGTT  EEEE  -------------------------   SEEEES  SSS S     SEEEEES    HHHHHHHGGGG STT EEEEE:    
ExpBur          :bbbebbeebeebeebebbeeee-------------------------eeebbebbbeeebbeeeeeebebbbbbbbeeebbebbbbbbbbeeeebebbbb:    

queryA       742:TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKEC: 841
                :****************************************************** *********************************************:
5f9h_E_1     512:TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEXPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKEC: 611
SecStr          :ESSSHHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHHHT -     B S  EEEETTT  EEEETTSEEEETTTEEEE SHHHHHH:    
ExpBur          :bbeeebbeebeebeebbebbeebbeebeeeeeeebeeebeebbeeebeebeeee-eeeeeeeeebebbbbbbbbebbebeebbbbeeeebbbeeeebeee:    

queryA       842:FVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 922
                :********************************************************** **********************:
5f9h_E_1     612:FVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATXVQTLYSKWKDFHFEKIPFDPAE: 692
SecStr          :EEEEE SS    TT  EEEEEEE STT   EEEEEEEETTEEEEEE GGGEEEE TT - EEE SSGGG  B  EE  S  :    
ExpBur          :beeeebeeeeeeeebebebbbbbeeeebebebbbbbbeeeeebbbbebebbbbeeeee-ebeeeeebeebebeeeebeeee:

Protein Model on 5f9h_E_1_U_1 (TEMPLATE: 5f9h )

Input Residue Numbers for Focused Sites