[pdbjlvh2]Protein Model on 5f9h_A_1_Q

Protein Model on 5f9h_A_1_Q_1 (TEMPLATE: 5f9h )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(RIGI_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [646 aa]	Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN
2	b		Q 1 (B)	non-polymer(GTP)	GUANOSINE-5'-TRIPHOSPHATE	664R 830H 847H 853F 858K 861K 872D 875I 886V 888K (identity: 100.0 %/94.7 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5f9h_A_1 identity=94.7%

queryA       241:FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN: 340
                :****************************************************************************************************:
5f9h_A_1      11:FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN: 110
SecStr          :    HHHHHHHHHHHTT  EEEE  TTS HHHHHHHHHHHHHHTS TT    EEEE SSHHHHHHHHHHHHHHHTTTT  EEEE TTT TTS HHHHHHT:    
ExpBur          :eeeeebbebbbebbeeeebbbbbbebebebebbbbbbbbebbeebeeeeebbbbbbbeeeebbeebeeebeeebeeeeeebebbbeeebeeeebeeebee:    

queryA       341:NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA: 440
                :****************************************************************************************************:
5f9h_A_1     111:NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA: 210
SecStr          : SEEEE HHHHHHHHHHTSS  GGG SEEEEETGGG STTSHHHHHHHHHHHHHHSSS     EEEEEES    TT SSHHHHHHHHHHHHHHTT  EEE:    
ExpBur          :bbbbbbbbebbbebbeeeebeebeebebbbbbbbbebeeeebbbebbbebbebeeeeeeeeebbbbbbbbbbbbeebeeeeebbeebbebbbebbbbbbb:    

queryA       441:TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL: 540
                :*****************************************************        ***************************************:
5f9h_A_1     211:TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLXXXXXXXXREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL: 310
SecStr          :   TTHHHHHTTS   EEEEEE    S  SHHHHHHHHHHHHHHHHTTSS   --------  TTSHHHHHHHHHHHHHHHH   SSTTTHHHHHHHHHH:    
ExpBur          :ebeeeeeebeeebeebebeeeebeebeeeebeebbbbbbbebeebbeeeeeee--------eeebeeebeeebeebeeebbeeeeeeeeebbbebbbbbb:    

queryA       541:YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV: 640
                :************************************* **************************************************************:
5f9h_A_1     311:YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAXFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV: 410
SecStr          :HHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHS  -  TTHHHHHHHHHHHHHHHHHHHT GGG  HHHHHHHHHHHHHHHH TT  EEEE SSHHHH:    
ExpBur          :bbebbeebbbbbebbeebbbebbbeebeebbeeeeee-ebebbeebbeebeeeeeebbebbeeeebebebbeebbebbeebbeeeeebebbbbbeeeebb:    

queryA       641:DALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFL: 740
                :************************                         ***************************************************:
5f9h_A_1     411:DALKNWIEGNPKLSFLKPGILTGRXXXXXXXXXXXXXXXXXXXXXXXXXDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFL: 510
SecStr          :HHHHHHHHT STTTT  EEEE   -------------------------  SEEEES  SSS S  S  SEEEEES    HHHHHHHGGGG STT EEEE:    
ExpBur          :ebbbebbeebeebeebebbeeeee-------------------------eebbebbbeeebbeeeeeebebbbbbbbeeebbebbbbbbbbbeeebebbb:    
Contact         :                       b                                                                            

queryA       741:LTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKE: 840
                :******************************************************  ********************************************:
5f9h_A_1     511:LTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQXXPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKE: 610
SecStr          :EES HHHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHHH --         EEEEETTT  EEEETTSEEEETTTEEEE STTTTT:    
ExpBur          :bbeeeebbeebeebeebbebbeebbeebeeeeeeebeeebeebbeeebeebeee--eeeeeeeeebbbbbbbbbbebbebeebbbbeeeebbbeeeebee:    
Contact         :                                                                                         b          

queryA       841:CFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 922
                :**********************************************************************************:
5f9h_A_1     611:CFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 692
SecStr          :TEEEEE SS  EETTEEEEEEEEE STT   EEEEEEEETTEEEEEE GGGEEEEETTT  EE  SSGGG  S  EE  TT :    
ExpBur          :bbeeeebeeeeeeeebeeebbbbbeeeebebebbbbbebeeeebbbbebebbbbbbeeeeebeeeeebeebebeeeebeeee:    
Contact         :      b     b    b  b          b  b          b b

Protein Model on 5f9h_A_1_Q_1 (TEMPLATE: 5f9h )

Input Residue Numbers for Focused Sites