Protein Model on 5f9h_A_1_B_1
(TEMPLATE: 
5f9h
)Protein Model on 5f9h_A_1_B_1
(TEMPLATE: 5f9h
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DOWNLOAD: [sequence-replaced 3D model]
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RIGI_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [646 aa] | Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN | |
| 2 | b | B 1 (B) | polymer(polyribonucleotide) | RNA (5'-R(P*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP*UP*AP*UP*UP*AP*UP*AP*UP*UP*C)-3') | 298N 299Q 300I 325S 326G 347T 349Q 350I 353N 379K 380Q 381H 382P 507Q 508K 510E 511Q 514V 518K 546R 635K 636T 637R 662T 663G 664R 697T 698S 700A 718V 720N 750K 853F 854S 888K 906S 908W (identity: 100.0 %/94.7 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5f9h_A_1 identity=94.7% |
queryA 241:FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN: 340
:****************************************************************************************************:
5f9h_A_1 11:FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN: 110
SecStr : HHHHHHHHHHHTT EEEE TTS HHHHHHHHHHHHHHTS TT EEEE SSHHHHHHHHHHHHHHHTTTT EEEE TTT TTS HHHHHHT:
ExpBur :eeeeebbebbbebbeeeebbbbbbebebebebbbbbbbbebbeebeeeeebbbbbbbeeeebbeebeeebeeebeeeeeebebbbeeebeeeebeeebee:
Contact : bbb bb
queryA 341:NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA: 440
:****************************************************************************************************:
5f9h_A_1 111:NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA: 210
SecStr : SEEEE HHHHHHHHHHTSS GGG SEEEEETGGG STTSHHHHHHHHHHHHHHSSS EEEEEES TT SSHHHHHHHHHHHHHHTT EEE:
ExpBur :bbbbbbbbebbbebbeeeebeebeebebbbbbbbbebeeeebbbebbbebbebeeeeeeeeebbbbbbbbbbbbeebeeeeebbeebbebbbebbbbbbb:
Contact : b bb b bbbb
queryA 441:TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL: 540
:***************************************************** ***************************************:
5f9h_A_1 211:TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLXXXXXXXXREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL: 310
SecStr : TTHHHHHTTS EEEEEE S SHHHHHHHHHHHHHHHHTTSS -------- TTSHHHHHHHHHHHHHHHH SSTTTHHHHHHHHHH:
ExpBur :ebeeeeeebeeebeebebeeeebeebeeeebeebbbbbbbebeebbeeeeeee--------eeebeeebeeebeebeeebbeeeeeeeeebbbebbbbbb:
Contact : bb bb b b
queryA 541:YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV: 640
:************************************* **************************************************************:
5f9h_A_1 311:YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAXFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV: 410
SecStr :HHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHS - TTHHHHHHHHHHHHHHHHHHHT GGG HHHHHHHHHHHHHHHH TT EEEE SSHHHH:
ExpBur :bbebbeebbbbbebbeebbbebbbeebeebbeeeeee-ebebbeebbeebeeeeeebbebbeeeebebebbeebbebbeebbeeeeebebbbbbeeeebb:
Contact : b bbb
queryA 641:DALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFL: 740
:************************ ***************************************************:
5f9h_A_1 411:DALKNWIEGNPKLSFLKPGILTGRXXXXXXXXXXXXXXXXXXXXXXXXXDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFL: 510
SecStr :HHHHHHHHT STTTT EEEE ------------------------- SEEEES SSS S S SEEEEES HHHHHHHGGGG STT EEEE:
ExpBur :ebbbebbeebeebeebebbeeeee-------------------------eebbebbbeeebbeeeeeebebbbbbbbeeebbebbbbbbbbbeeebebbb:
Contact : bbb bb b b b
queryA 741:LTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKE: 840
:****************************************************** ********************************************:
5f9h_A_1 511:LTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQXXPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKE: 610
SecStr :EES HHHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHHH -- EEEEETTT EEEETTSEEEETTTEEEE STTTTT:
ExpBur :bbeeeebbeebeebeebbebbeebbeebeeeeeeebeeebeebbeeebeebeee--eeeeeeeeebbbbbbbbbbebbebeebbbbeeeebbbeeeebee:
Contact : b
queryA 841:CFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 922
:**********************************************************************************:
5f9h_A_1 611:CFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 692
SecStr :TEEEEE SS EETTEEEEEEEEE STT EEEEEEEETTEEEEEE GGGEEEEETTT EE SSGGG S EE TT :
ExpBur :bbeeeebeeeeeeeebeeebbbbbeeeebebebbbbbebeeeebbbbebebbbbbbeeeeebeeeeebeebebeeeebeeee:
Contact : bb b b b
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[assembly_id:1]
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