[pdbjlvh2]Protein Model on 5f9f_E_1_AA

Protein Model on 5f9f_E_1_AA_1 (TEMPLATE: 5f9f )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(RIGI_HUMAN)	E 1 (E)	polymer(polypeptide(L)) [672 aa]	Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN
2	b		AA 1 (E)	non-polymer(BU3)	(R,R)-2,3-BUTANEDIOL	714L 717Y 719G 720N 723K 724M 727T 751E 754N (identity: 100.0 %/98.7 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5f9f_E_1 identity=98.7%

queryA       242:KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 341
                :****************************************************************************************************:
5f9f_E_1      12:KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 111
SecStr          :   HHHHHHHHHHHTT  EEEE  TTS HHHHHHHHHHHHHHSS SS    EEEE SSHHHHHHHHHHHHHHSTTTT  EEEE GGG SSS HHHHHHT :    
ExpBur          :eeeebbebbbebbeeeebbbbbbebebeeeebbbbbbeebbeeeeeeeebbbbbbbeeeebbeebeeebeeebeebebebebbbeeeeeeeebeeebeeb:    

queryA       342:DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT: 441
                :****************************************************************************************************:
5f9f_E_1     112:DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT: 211
SecStr          :SEEEE HHHHHHHHHHTSS  GGG SEEEEETGGG STT HHHHHHHHHHHHHHTT  S   EEEEEES    TT  SHHHHHHHHHHHHHHTT  EEE :    
ExpBur          :bbbbbbbebbbebbeeeebeebeebebbbbbbbbebeeebbbbebbbebbebeeeeeeeeebbbbbbbbbbbbeebeeeeebbeebbebbbebbbbbbbe:    

queryA       442:VKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY: 541
                :***************************************************         ****************************************:
5f9f_E_1     212:VKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDXXXXXXXXXREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY: 311
SecStr          :  TTHHHHHTTS   EEEEEE    S  HHHHHHHHHHHHHHHHHHHH   ---------  TTSHHHHHHHHHHHHHHTT   SSHHHHHHHHHHHHHH:    
ExpBur          :beeeeebbeeebeebebeeeebeebeeeebeebbbebbeebeebbeeebee---------eebbeeebeeebeeeebebbeeeeeeeeebeebbbbbbbb:    

queryA       542:TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD: 641
                :****************************************************************************************************:
5f9f_E_1     312:TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD: 411
SecStr          :HHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHS   HHHHHHHHHHHHHHHHHHHHHT TTS  HHHHHHHHHHHHHHHH TT  EEEE S HHHHH:    
ExpBur          :bebbeebbbbbebbebbbbebbbeebeebbeebbeeeeeeebbebbeebeeebeebeebeeeeebebebbebbbebbeebbeeeeebbbbbbbeeeebbe:    

queryA       642:ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL: 741
                :****************************************************************************************************:
5f9f_E_1     412:ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL: 511
SecStr          :HHHHHHHH GGGTT  EEEE     TTSS S  HHHHHHHHHH SSSSS SEEEES  SSS S  S  SEEEEES    HHHHHHGGGGG STT EEEEE:    
ExpBur          :bbeebbeebeebeebebbbbbeeeeeeeeeebeeeeebebeebbeeeeeebbbbbbeeebbbeebeebebbbbbbbeeebbebbbbbbbbbeeebebbbb:    
Contact         :                                                                        b  b bb  bb  b              

queryA       742:TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKEC: 841
                :****************************************************************************************************:
5f9f_E_1     512:TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKEC: 611
SecStr          :ES SHHHHHHHHHHHHHHHHHHHHHHHHTS HHHHHHHHHHHHHHHHHHHHHT       B S EEEEETTT  EEEETTTEEEETTTEEEE STTGGGS:    
ExpBur          :bbeeebbeebeebeebbebbeebbeebeeeeeeebeeebeebbeeebeeeeeeeeeeeeeeeeebbbbbbbbbeebbebeebbbbeeeebbbeeeebeee:    
Contact         :         b  b                                                                                       

queryA       842:FVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 922
                :*********************************************************************************:
5f9f_E_1     612:FVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 692
SecStr          :EEEEE SS    TT  EEEEEEE GGG   EEEEEEEETTEEEEEE GGGEEEEETTT  EE  SSGGG  B  EE  TT :    
ExpBur          :beeeebeeeeeeeebbbebbbbbebeebebbbbbebbeeebebbbbebebbbbbbeeeeebeeeeebeebebbeeebeeee:

Protein Model on 5f9f_E_1_AA_1 (TEMPLATE: 5f9f )

Input Residue Numbers for Focused Sites