Protein Model on 5f9f_A_1_N_1 (TEMPLATE: 5f9f )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(RIGI_HUMAN) A 1 (A) polymer(polypeptide(L)) [673 aa] Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN
2 b N 1 (A) non-polymer(MG) MAGNESIUM ION 723K (identity: 100.0 %/98.5 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5f9f_A_1 identity=98.5%
queryA       240:PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE: 339
                :****************************************************************************************************:
5f9f_A_1      10:PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE: 109
SecStr          :     HHHHHHHHHHHTT  EEEE  TTS HHHHHHHHHHHHHHTS TT    EEEE SSHHHHHHHHHHHHHHHTTTT  EEEE GGG TTS HHHHHH:    
ExpBur          :eeeeeebbebbbebbeeeebbbbbbebebeeebbbbbbbbebbeeeeeeeebbbbbbbebeebbeebeeebeebbeeeebebebbbeeebeeeebeeebe:    

queryA       340:NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI: 439
                :****************************************************************************************************:
5f9f_A_1     110:NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI: 209
SecStr          :T SEEEE HHHHHHHHHHTSS  GGG SEEEEETGGG STT HHHHHHHHHHHHHHSS  S   EEEEEES    TT  SHHHHHHHHHHHHHHTT SEE:    
ExpBur          :ebbbbbbbbebbbebbeeeebeebeebebbbbbbbbebeeebbbbebbbebbebeeeeeeeeebbbbbbbbbbbbeebeeeeebbeebbebbbebbbbbb:    

queryA       440:ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF: 539
                :******************************************************        **************************************:
5f9f_A_1     210:ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLXXXXXXXXREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF: 309
SecStr          :E   TTHHHHHHHS   EEEEEE    S  HHHHHHHHHHHHHHHHHHTTS   --------  SSSHHHHHHHHHHHHHHHT   SSSHHHHHHHHHHH:    
ExpBur          :bbbeeeeeebeeebeebebeeeebeebeebebeebbbebbeebbebbeeebeee--------eebeeeebeeebeebeeebbeeeeeeeeebbebbbbbb:    

queryA       540:LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL: 639
                :****************************************************************************************************:
5f9f_A_1     310:LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL: 409
SecStr          :HHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHTTS   HHHHHHHHHHHHHHHHHHHHHH GGG  HHHHHHHHHHHHHHHH TT  EEEE S HHH:    
ExpBur          :bbbebbeebbbbbebbeebebebbbeebeebbeebeeeeeeebbeebbeebeeeeeebeebbeeeebebebbeebbebbeebbeeeeebbbbbbbeeeeb:    

queryA       640:VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCF: 739
                :****************************************************************************************************:
5f9f_A_1     410:VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCF: 509
SecStr          :HHHHHHHHHT GGGTT  EEEE     TTSS S  HHHHHHHHHT SSSSS SEEEE   SSS S     SEEEEES    HHHHHHGGGGG STT EEE:    
ExpBur          :bebbeebbeebeebeebebbbbbeeeeeeeeeebeeeebbebeebbeeeeeebbbbbbeeebbbeebeebebbbbbbbeeebbebbbbbbbbbeeebebb:    
Contact         :                                                                                   b                

queryA       740:LLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK: 839
                :*******************************************************  *******************************************:
5f9f_A_1     510:LLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQXXPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK: 609
SecStr          :EEES HHHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHTT --       S EEEEETTT  EEEEGGGEEEETTTEEEE SSSGG:    
ExpBur          :bbbeeeebbeebeebeebbebbeebbeebeeeeeeebeeebeebbeeebeeeeee--eeeeeeeeebbbbbbbbbbebbebeebbbbeeeebbbeeeebe:    

queryA       840:ECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 922
                :***********************************************************************************:
5f9f_A_1     610:ECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 692
SecStr          :GSEEEEE SS    TT  EEEEEEE GGG   EEEEEEEETTEEEEEE GGGEEEEETTT  EE  SSGGG  S   B  TT :    
ExpBur          :eebeeeebeeeeeeeebebebbbbbeeeebebebbbebbbeeeebbbbebebbbbbbeeeeebeeeeebeebebeeeebeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123