[pdbjlvh2]Protein Model on 5f98_C_1_K

Protein Model on 5f98_C_1_K_1 (TEMPLATE: 5f98 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(RIGI_HUMAN)	C 1 (C)	polymer(polypeptide(L)) [648 aa]	Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN
2	b		K 1 (K)	polymer(polypeptide(L)) [644 aa]	Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN	881T 920P 921A (identity: 100.0 %/94.9 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5f98_C_1 identity=94.9%

queryA       240:PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE: 339
                :****************************************************************************************************:
5f98_C_1      10:PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE: 109
SecStr          :     HHHHHHHHHHHTT  EEEE  TTS HHHHHHHHHHHHHTTS SS    EEEE SSHHHHHHHHHHHHHHHTTTT  EEEE GGG TTS HHHHHH:    
ExpBur          :eeeeeebbebbbebbbeeebbbbbbebebeeeebbbbbbbebbeeeeeeeebbbbbbbeeeebbeebeeebeebbeeeeeebebbbeeebeeeebeeebe:    

queryA       340:NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI: 439
                :****************************************************************************************************:
5f98_C_1     110:NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI: 209
SecStr          :T SEEEE HHHHHHHHHHTSS  GGG SEEEEETGGG STT HHHHHHHHHHHHHSSS      EEEEEES    TT SSHHHHHHHHHHHHHHTT SEE:    
ExpBur          :ebbbbbbbbebbbebbeeeebeebeebebbbbbbbbebeeeebbbebbbebbebebeeeeeeebbbbbbbbbbbbeebeeeeebbeebbebbbbbbbbbb:    

queryA       440:ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF: 539
                :**************************** *************************        **************************************:
5f98_C_1     210:ATVKHNLEELEQVVYKPQKFFRKVESRIXDKFKYIIAQLMRDTESLAKRICKDLXXXXXXXXREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF: 309
SecStr          :E   TTHHHHTTTS   EEEEEE     - TTTSSHHHHHHHHHHHHHTT    --------  SSSHHHHHHHHHHHHHHTT   SS HHHHHHHHHHH:    
ExpBur          :bbbeeeeeebeeebeebebeeeebeebe-ebbeeebeebbeebbeebeeeeeee--------eeeeeeebeeebeeebeebbeeeeeeeeebeeebbbbb:    

queryA       540:LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL: 639
                :****************************************************************************************************:
5f98_C_1     310:LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL: 409
SecStr          :HHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHT   HHHHHHHHHHHHTTTTSSSGGG SSS  HHHHHHHHHHHHHHHH TT  EEEE SSSHH:    
ExpBur          :bbbebbeebbbbbebbeebbbebbbeebeebbeebeeeeeeeebeebbeebeebbeebeeebeeeebebebbebbbebbeebbeeeeebebbbbbeeeeb:    

queryA       640:VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCF: 739
                :************************                          **************************************************:
5f98_C_1     410:VDALKNWIEGNPKLSFLKPGILTGXXXXXXXXXXXXXXXXXXXXXXXXXXDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCF: 509
SecStr          :HHHHHHHHHT GGGTT   EEE  --------------------------  SEEEES   SS S     SEEEEES    HHHHHHHGGGG STT EEE:    
ExpBur          :bebbeebbeebeebeebebbeeee--------------------------eebbebbbeeebbeeeeeebebbbbbbbeeebbbbbbebbbbbeeebebb:    

queryA       740:LLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK: 839
                :****************************************************************************************************:
5f98_C_1     510:LLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK: 609
SecStr          :EEES HHHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHHHH       B S EEEEESSS  EEEETTTEEEETTTEEEE SSSGG:    
ExpBur          :bbbeeeebbebbeebeeebebbeebbeebeeeeeeebeeebeebbeeebeeeeeeeeeeeeeeeeebebbbbbbbeebbebeebebbeeeebbbbeeebe:    

queryA       840:ECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 922
                :***********************************************************************************:
5f98_C_1     610:ECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 692
SecStr          :GSEEEEE SS    TT  EEEEEEE STT   EEEEEEEETTEEEEEE GGGEEEEESSS   B  SSTTTS B  EE  TT :    
ExpBur          :eebeeeebeeeeeeeebeebbbbebebeebebebbbbbbbeebebbbbebebbbbbbeeeeebeeeebbeebebeeeebeeee:    
Contact         :                                         b                                      bb

Protein Model on 5f98_C_1_K_1 (TEMPLATE: 5f98 )

Input Residue Numbers for Focused Sites