[pdbjlvh2]Protein Model on 5f98_A_1_G

Protein Model on 5f98_A_1_G_1 (TEMPLATE: 5f98 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(RIGI_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [650 aa]	Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN
2	b		G 1 (G)	polymer(polypeptide(L)) [647 aa]	Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN	280H (identity: 100.0 %/95.2 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5f98_A_1 identity=95.2%

queryA       240:PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE: 339
                :****************************************************************************************************:
5f98_A_1      10:PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE: 109
SecStr          :     HHHHHHHTTGGGT  EEEE  TTS HHHHHHHHHHHHHHTS SS    EEEE SSHHHHHHHHHHHHHHHTTTT  EEEE GGG TTS HHHHHH:    
ExpBur          :eeeeeebbebbbeebeeeebbbbbbebebeeeebbbbbbbebbeeeeeeeebbbbbbbeeeebbeebeeebeebbeeeeeebebbbeeebeeeebeeebe:    
Contact         :                                        b                                                           

queryA       340:NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI: 439
                :****************************************************************************************************:
5f98_A_1     110:NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI: 209
SecStr          :T SEEEE HHHHHHHHHHTSS  GGG SEEEEETGGG STT HHHHHHHHHHHHHSSS      EEEEEES     S  SHHHHHHHHHHHHHHTT  EE:    
ExpBur          :ebbbbbbbbebbbebbeeeebeebeebebbbbbbbbbbeeeebbbebbbebbebebeeeeeeebbbbbbbbbbbbeebeeeeebbeebbbbbbebbbbbb:    

queryA       440:ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF: 539
                :******************************************************        **************************************:
5f98_A_1     210:ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLXXXXXXXXREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF: 309
SecStr          :E  SSSHHHHTTTS   EEEEEE    SS SHHHHHHHHHHHHHHHHHTTS   --------  TTSHHHHHHHHHHHHHTTS   TTSSSHHHHHHHHH:    
ExpBur          :bbbeeeeebbeeebeebebeeeeeebbeeebbbebbeebbbebeebeeeeeeee--------eeeeeeebbeebeeeebebbeeeeeeeebbbeebbbbe:    

queryA       540:LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL: 639
                :****************************************************************************************************:
5f98_A_1     310:LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL: 409
SecStr          :HHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHT   TTTHHHHHHHHHSHHHHHHHTT TTS  HHHHHHHHHHHHHHTT TT  EEEE SSHHH:    
ExpBur          :ebbebbeebbbbbebbebbbbebbbeebbebbeeebeeeebebbeebbeebeebeeebeebbeeeeeebebbebbbebbeebbeeeeebebbbbbeeeeb:    

queryA       640:VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCF: 739
                :*************************                         **************************************************:
5f98_A_1     410:VDALKNWIEGNPKLSFLKPGILTGRXXXXXXXXXXXXXXXXXXXXXXXXXDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCF: 509
SecStr          :HHHHHHHHHT GGGTT   EEE   -------------------------  SEEEES  SSS S     SEEEEES    HHHHHHHTTTT STT EEE:    
ExpBur          :bebbbebbeebeebeebebbeeeee-------------------------eebbebbbeeebbeeeeeebebbbbbbbeeebbbbbbbbbbbbeeebebb:    

queryA       740:LLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK: 839
                :****************************************************************************************************:
5f98_A_1     510:LLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK: 609
SecStr          :EEES HHHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHTTSSSS       B   EEEEETTT  EEEETTTEEEETTTEEEE HHHHG:    
ExpBur          :bbbbeeebbebbeebeeebebbeebbeebeeeeeeebeeebeebbeeeeeeeeeeeeeeeeeeeeebebbbbbbbbebbebeebbbbeeeebbbeeeebe:    

queryA       840:ECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 922
                :***********************************************************************************:
5f98_A_1     610:ECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 692
SecStr          :GGEEEEE SS    TT  EEEEEEE STT   EEEEEEEETTEEEEEE GGGEEEEETTT  EEE SSGGG  B   B  S  :    
ExpBur          :eebeeeebeeeeeeeebebebebebeeeeeebebbbebbeeeeebbbbebebbbbbbeeeeebeeeeebeebebeeeeeeeee:

Protein Model on 5f98_A_1_G_1 (TEMPLATE: 5f98 )

Input Residue Numbers for Focused Sites