CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(RIGI_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [650 aa] | Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN | |
2 | b | C 1 (C) | polymer(polypeptide(L)) [648 aa] | Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN | 287Q 303Y 304E 307K 311S 315E 316R 318G 319Y 320R 322T 323G 325S 327A 328T 332V 333P 336Q 337I 340N (identity: 100.0 %/95.2 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5f98_A_1 identity=95.2% |
queryA 240:PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE: 339 :****************************************************************************************************: 5f98_A_1 10:PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE: 109 SecStr : HHHHHHHTTGGGT EEEE TTS HHHHHHHHHHHHHHTS SS EEEE SSHHHHHHHHHHHHHHHTTTT EEEE GGG TTS HHHHHH: ExpBur :eeeeeebbebbbeebeeeebbbbbbebebeeeebbbbbbbebbeeeeeeeebbbbbbbeeeebbeebeeebeebbeeeeeebebbbeeebeeeebeeebe: Contact : b bb b b bb bbb bb b bb bb bb queryA 340:NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI: 439 :****************************************************************************************************: 5f98_A_1 110:NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI: 209 SecStr :T SEEEE HHHHHHHHHHTSS GGG SEEEEETGGG STT HHHHHHHHHHHHHSSS EEEEEES S SHHHHHHHHHHHHHHTT EE: ExpBur :ebbbbbbbbebbbebbeeeebeebeebebbbbbbbbbbeeeebbbebbbebbebebeeeeeeebbbbbbbbbbbbeebeeeeebbeebbbbbbebbbbbb: Contact :b queryA 440:ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF: 539 :****************************************************** **************************************: 5f98_A_1 210:ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLXXXXXXXXREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF: 309 SecStr :E SSSHHHHTTTS EEEEEE SS SHHHHHHHHHHHHHHHHHTTS -------- TTSHHHHHHHHHHHHHTTS TTSSSHHHHHHHHH: ExpBur :bbbeeeeebbeeebeebebeeeeeebbeeebbbebbeebbbebeebeeeeeeee--------eeeeeeebbeebeeeebebbeeeeeeeebbbeebbbbe: queryA 540:LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL: 639 :****************************************************************************************************: 5f98_A_1 310:LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL: 409 SecStr :HHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHT TTTHHHHHHHHHSHHHHHHHTT TTS HHHHHHHHHHHHHHTT TT EEEE SSHHH: ExpBur :ebbebbeebbbbbebbebbbbebbbeebbebbeeebeeeebebbeebbeebeebeeebeebbeeeeeebebbebbbebbeebbeeeeebebbbbbeeeeb: queryA 640:VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCF: 739 :************************* **************************************************: 5f98_A_1 410:VDALKNWIEGNPKLSFLKPGILTGRXXXXXXXXXXXXXXXXXXXXXXXXXDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCF: 509 SecStr :HHHHHHHHHT GGGTT EEE ------------------------- SEEEES SSS S SEEEEES HHHHHHHTTTT STT EEE: ExpBur :bebbbebbeebeebeebebbeeeee-------------------------eebbebbbeeebbeeeeeebebbbbbbbeeebbbbbbbbbbbbeeebebb: queryA 740:LLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK: 839 :****************************************************************************************************: 5f98_A_1 510:LLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK: 609 SecStr :EEES HHHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHTTSSSS B EEEEETTT EEEETTTEEEETTTEEEE HHHHG: ExpBur :bbbbeeebbebbeebeeebebbeebbeebeeeeeeebeeebeebbeeeeeeeeeeeeeeeeeeeeebebbbbbbbbebbebeebbbbeeeebbbeeeebe: queryA 840:ECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 922 :***********************************************************************************: 5f98_A_1 610:ECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 692 SecStr :GGEEEEE SS TT EEEEEEE STT EEEEEEEETTEEEEEE GGGEEEEETTT EEE SSGGG B B S : ExpBur :eebeeeebeeeeeeeebebebebebeeeeeebebbbebbeeeeebbbbebebbbbbbeeeeebeeeeebeebebeeeeeeeee: |