Protein Model on 4gl2_A_1_F_1
(TEMPLATE: 
4gl2
)Protein Model on 4gl2_A_1_F_1
(TEMPLATE: 4gl2
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DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RIGI_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [617 aa] | Interferon-induced helicase C domain-containing protein 1 :IFIH1_HUMAN | |
| 2 | b | F 1 (D) | polymer(polyribonucleotide) | RNA (5'-R(P*AP*GP*GP*GP*CP*CP*GP*CP*GP*GP*AP*U)-3') | 298N 299Q(K) 300I(V) 325S 347T 349Q 350I 353N 511Q 514V(I) 546R 635K 636T 637R 662T(I) 663G 664R(A) 665G 668N(S) 675L(Q) 678Q 699V 827E 829C(M) 830H 877V(M) 878K(V) 879Y(H) 906S(K) (identity: 58.6 %/37.9 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:4gl2_A_1 identity=37.9% |
queryA 244:RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL-KKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFE---RHGYRVTGISGATAENVPVEQIVE: 339
:* ** * * ** *** *** ******* * * ** ** *** * ** * * * *** * * * :
4gl2_A_1 9:RPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQ---LFRKEFQPFLKKWYRVIGLSXXXXLKISFPEVVK: 105
SecStr : HHHHHHHHHHHSS EEE TTS HHHHHHHHHHHHHHHHHHHT B EES SHHHHH---HHHHTHHHHHTTTS EEEE ---- HHHHHH:
ExpBur :eebbebbbebbbeeebbbbbbebebebeebbbebbebbbeebeeeeeebbbbbbbeeebbbeb---bbeebbeeebeeebebeebe----eeeebeebbe:
Contact : bbb b
queryA 340:NNDIIILTPQILVNNLKKGTIP-----SLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSG--------PLPQVIGLTASVGVGDAKNTDEALDY: 426
: **** * *** * * ** * * * **** * * ** ** ** *** **** ***** *** * * :
4gl2_A_1 106:SCDIIISTAQILENSLLXXXXXXXXGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKXXXXVIPLPQILGLTASPGVGGATKQAKAEEH: 205
SecStr :S SEEEEEHHHHHHHT -------- GGG SEEEEESGGG BTTBSS SHHHHHHHHHHHHHHHH ---- EEEEE S S SHHHHHHH:
ExpBur :ebbbbbbebeebbebbe--------ebebeebbbbbbbbbbebeeeeebbebbbbbbebeeebeeeee----eeeebbbbbbbbbbbbeebeeeeebeeb:
Contact : b bb b
queryA 427:ICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMP: 526
:* **** *** * *** ** * * * * ** * * **** **** * :
4gl2_A_1 206:ILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADXXXXXPFKEKLLEIMTRIQTYCQ-----MSPMS-----DFGTQPYEQWAIQMEKKA----AK: 291
SecStr :HHHHHHHHT S TTHHHHHHHS EEEEEEE ----- HHHHHHHHHHHHHHHHT----- S----- SSSHHHHHHHHHHHHHH----HH:
ExpBur :bbbbbbbbbbeebbbbeebeeebeeeeeebeeeeeeee-----ebeebbeebbeebbeebe-----bebee-----ebbeeebbeebeebbeeb----be:
Contact : b b
queryA 527:DKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGF-------------DEIEQDLTQRFEEKLQELESVSRDPSNENPKLED: 613
: * * ****** ** * ** ** * * * ** * * * * * ** :
4gl2_A_1 292:EGNRKERVC------AEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFXXXXXXXXXXXXLDETDRFLMTLFFENNKMLKRLAENPXXXXEKLTK: 385
SecStr :HT TTTHHH------HHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHH ------------ HHHHHHHHHHHHHHHHHHHHHT ---- SS :
ExpBur :eeeeeebbb------bbbbebbbbbbebbeebbbebbbeebbeebeebeebbe------------eeebbebbeebbeebeebbeeebeee----eeeeb:
Contact : b
queryA 614:LCFILQEEYHLNPETIT-ILFVKTRALVDALKNWIEGNPKLSFLKPGI--LTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN: 710
:* * * * * * *** ** ** * * * * * ** ** * * **** ** ** ** **:
4gl2_A_1 386:LRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAXXXXXAHHLIGAGHSSEFKPMTQNEQKEVISKFR-TXXXNLLIATTVAEEGLDIKECN: 484
SecStr :SHHHHHHHHHHSSS EEEE S HHHHHHHHHHHHSS S ----- EE S TT HHHHHHHHHHH - --- SEEE S TTS S :
ExpBur :beebbeebeeeeeebbbbbbbbeebebbebbbbbbeeeeeee-----eebbbeeeeeeeeeebeeeebeebbeebe-e---ebebbbbeebbbbebeebb:
Contact : bbb bbbb b b b b
queryA 711:LVILYEYVGNVIKMIQTRGRGRARGSKCFLLT-SNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENK---: 806
: ** * * * * * * *** ** * * * **** * * **** * * *** * * :
4gl2_A_1 485:IVIRYGLVTNEIAMVQARGRARADESTYVLVAHSGSGVIERETVNDFREKMMYKAIHCVQNMKPEEYAHKILELQMQSIMEKKMKTKXXXXXXXXXXPSL: 584
SecStr : EEES HHHHHHHHTTS SSS EEEEEEESSS SHHHHHHHHHHHHHHHHHHHHTTSS HHHHHHHHHHHHHHHHHH S ---------- S:
ExpBur :bbbbbbbeeebbbbbbbbbbbbeeebbbbbbbeeeeebeeebeebeebbebbeebbeebbeeeeeebeeebeeebeebbeeeeeeee----------eee:
queryA 807:-KLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSR-PHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTL: 904
: ** * *** * *** * *** * * * * ** * * ** *** :
4gl2_A_1 585:ITFLCKNCSVLACSGEDIHVIEKMHHVNMTPEFKELYIVRXXXXXXXXXXXXXXXGEIIC---KCGQAWGTMMVHKXXXLPCLKIRNFVVVFKNNSTKKQ: 681
SecStr :EEEEESSS EEEEGGG EEETTTEEE HHHHHH EE --------------- EEE ---SSS EEEEE --- EEE GGGEEEEETTTTEEE :
ExpBur :bbbbbbbbeeebbbbebbebbeeeebbbebeebeeebeee---------------eebbb---ebbbbbbebeeee---ebbbebbbbbbbbeeeeeeeb:
Contact : b bb bbb
queryA 905:YSKW: 908
:* **:
4gl2_A_1 682:YKKW: 685
SecStr : SSG:
ExpBur :beeb:
Contact : b
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[assembly_id:1]
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