[pdbjlvh2]Protein Model on 4bpb_A_1_D

Protein Model on 4bpb_A_1_D_1 (TEMPLATE: 4bpb )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(RIGI_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [634 aa]	PROBABLE ATP-DEPENDENT RNA HELICASE DDX58 :DDX58_HUMAN
2	b		D 1 (A)	non-polymer(ZN)	ZINC ION	810C 813C 864C 869C (identity: 100.0 %/92.0 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:4bpb_A_1 identity=92.0%

queryA       236:NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVE: 335
                :********************************************************************** *****************************:
4bpb_A_1       7:NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVE: 106
SecStr          : TTS     HHHHHHHHHHHTT  EEEE  TTS HHHHHHHHHHHHHHTS TT    EEEE SSHHHHHHHHHHHHHHTTTTT  EEEE TTTSSSS HH:    
ExpBur          :eeeeeeeeeebbebbbebbeeeebbbbbbeeebbbbbbbbbbbeebbeeeeeeeebbbbbbbeeeebbeebeebbeeebeeeeeebebbbeeebeeeebe:    

queryA       336:QIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLD: 435
                :*********************************************************************************** ****************:
4bpb_A_1     107:QIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLD: 206
SecStr          :HHHHT SEEEE HHHHHHHHHTTSS  GGG SEEEEETGGG STT HHHHHHHHHHHHHHTT SS   EEEEEES    TT  SHHHHHHHHHHHHHHTT:    
ExpBur          :ebbeebbbbbbbbebbbebbeeeebeebeebbbbbbbebeebeeeeebbebbbebbebeeeeeeeeebbbbbbbeebebeebeeeeebbeebbbbbbebb:    

queryA       436:ASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRIC: 535
                :***************************************************************************************      *******:
4bpb_A_1     207:ASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVXXXXXXDEESRIC: 306
SecStr          : SEEE   TTHHHHHTTS   EEEEEE    S  HHHHHHHHHHHHHHHHHHHH TTGGGTSS  S  TTSHHHHHHHHHHHHTS  ------  HHHHH:    
ExpBur          :bbbbbbbeebeeebeeeeeeeeeeeeebeebeeeebeebbbebbeebbebbeeebeebeebbeeeebebbeeebeebbebbeeebee------eebeeeb:    

queryA       536:KALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVK: 635
                :****************************************************************************************************:
4bpb_A_1     307:KALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVK: 406
SecStr          :HHHHHHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHS   HHHHHHHHHHHTSHHHHHHHHH TTS  HHHHHHHHHHHHHHTT TT  EEEE S:    
ExpBur          :ebbebbbbbbeebbbbbbbbebbebebbbeebeebbeebbeeeeeeebeebbeebeeebeebeebbeeeebebebbeebbebbeebbeeeeebebbbbbe:    

queryA       636:TRALVDALKNWIEGNPKLSFLKPGI--LTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRA: 733
                :*************************                                ***********     ************  ****         :
4bpb_A_1     407:TRALVDALKNWIEGNPKLSFLKPGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHNILIATSVADXXXXXAQCNLVILYEYVXXVIKMXXXXXXXXX: 506
SecStr          :SHHHHHHHHHHHHT GGGTT  EE --------------------------------   SEEEES  -----   SEEEEET  --    ---------:    
ExpBur          :eebbbebbbebbeebeebeebebbe--------------------------------eeeebebeeee-----eebebbbbbbee--eeee---------:    

queryA       734:RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTV: 833
                :********************************************************************************************** *****:
4bpb_A_1     507:RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEDCHYTV: 606
SecStr          :   EEEEEES HHHHHHHHHHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHHHT       B S EEEEETTT  EEEEGGGEEEETTTEEEE:    
ExpBur          :eebebbbbbeeeeebeeeeeeeeeeebbeebbeebeeeeeeebeeebeeebeeebeeeeeeeeeeeeeeeeebbbbbbeeeeebbebeebbbbeeeebbb:    
Contact         :                                                                            b  b                    

queryA       834:LGDAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPA: 921
                :****************************************************************************************:
4bpb_A_1     607:LGDAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPA: 694
SecStr          : SSTTTTSEEEEE SS  B SS EEEEEEEESSTTT  EEEEEEEETTEEEEEE GGGEEEEESSS  EEE S GGG  B  EE    :    
ExpBur          :eeeebeeebeeeebeeeeeeeebebebebbbeeeebeeebbbbbebeeeebbbbebebbbbeeeeeeeeeeeeebeebebbeeeeeee:    
Contact         :                              b    b

Protein Model on 4bpb_A_1_D_1 (TEMPLATE: 4bpb )

Input Residue Numbers for Focused Sites