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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(RIGI_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [628 aa] | PROBABLE ATP-DEPENDENT RNA HELICASE DDX58 :DDX58_HUMAN | |
2 | b | E 1 (A) | non-polymer(MG) | MAGNESIUM ION | 270K 271T 372D (identity: 100.0 %/91.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:4ay2_A_1 identity=91.7% |
queryA 240:PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE: 339 :****************************************************************** *********************************: 4ay2_A_1 2:PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVE: 101 SecStr : HHHHHHTHHHHTT EEEE TTS HHHHHHHHHHHHHHSS TT EEEE SSHHHHHHHHHHHHHHTTTTT EEEE TTS SSS HHHHHH: ExpBur :eeeeeebbebbbeebeeeebbbbbbeeebebebbbbbbbbebbeebeeeeebbbbbbbeeeeebeebeeebeeebeeeeeebebbbeeeeeeeebeeebe: Contact : bb queryA 340:NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI: 439 :****************************************************************************************************: 4ay2_A_1 102:NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI: 201 SecStr :T SEEEE HHHHHHHHHTTSS GGG SEEEEETGGG STT HHHHHHHHHHHHHHTT S EEEEEES S SHHHHHHHHHHHHHHHT EE: ExpBur :ebbbbbbbbebbbebbeeeebeebeebebbbbbebeebeeeeebbbbbbebbebeeeeeeeeebbbbbbbeebebeebeeeeebbeebbebbbbbbbbbb: Contact : b queryA 440:ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF: 539 :*********************************************************************************** **********: 4ay2_A_1 202:ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVXXXXXXXEESRICKALF: 301 SecStr :E SSHHHHHHT EEEEEE S SHHHHHHHHHHHHHHHHHHH GGGGGS S S TTSHHHHHHHHHHHHHS ------- HHHHHHHHH: ExpBur :bbbeebeeebeeeeeeeeeeeeebeebeeeebeebbbebbeebbebbeeebeebeeebeeeebebbeeebbebbeebbeebee-------eeeeebebbe: queryA 540:LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL: 639 :****************************************************************************************************: 4ay2_A_1 302:LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL: 401 SecStr :HHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHHHT GGG HHHHHHHHHHHHHHHH TT EEEE SSHHH: ExpBur :bbbebbeebbbbbbbbebbbbebbbeebeebbeebeeeeeeeebeebbeebeeeeeebbebbeeeebebebbeebbebbeebbeeeeebebbbbbebebb: queryA 640:VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCF: 739 :********************** ************** ************ ****: 4ay2_A_1 402:VDALKNWIEGNPKLSFLKPGILXXXXXXXXXXXXXXXXXXXXXXXXXXXGDHNILIATSVADEXXXXAQCNLVILYEYVXXXXXXXXXXXXXXXXXSKCF: 501 SecStr :HHHHHHHHHT GGGTT EEE --------------------------- TT EEEESS ---- SEEEEES ----------------- EEE: ExpBur :bebbeebbeebeebeebbbbee---------------------------eeeeebbbbbeeee----eebebbbebbee-----------------ebbb: queryA 740:LLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK: 839 :**************************************************************************************** ***********: 4ay2_A_1 502:LLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEDCHYTVLGDAFK: 601 SecStr :EEES HHHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHHHT B S EEEEETTT EEEEGGGEEEETTTEEEE SGGGT: ExpBur :bbbeeeeebeeeeeeeeeeebbeebbeebeeeebeebeeebeeebeeebeeeeeeeeeeeeeeeeebbbbbeeeebebbebeebbbbeeeebbbeeeebe: queryA 840:ECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 922 :***********************************************************************************: 4ay2_A_1 602:ECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 684 SecStr :TSEEEEE SS TTEEEEEEEEE STT EEEEEEEETTEEEEEE GGGEEEEETTT EE SSGGG B EE S : ExpBur :ebbeeeebeeeeeeeebebebbbbbeeeebeeebbbbbebeeeebbbbebebbbbbbeeeeeeeebeebeebebbeeeeeeee: |