[pdbjlvh2]Protein Model on 4a36_A_1_C

Protein Model on 4a36_A_1_C_1 (TEMPLATE: 4a36 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(RIGI_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [523 aa]	RETINOIC ACID INDUCIBLE PROTEIN I :D3TI84_ANAPL
2	b		C 1 (R)	polymer(polyribonucleotide)	5'-R(GPCPAPUPGPCPGPAPCPCPUPCPUPGP UPUPUPGP*A)-3'	378S(T) 379K(G) 380Q(N) 381H 507Q 508K(N) 511Q(H) (identity: 28.6 %/57.0 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:4a36_A_1 identity=57.0%

queryA       242:KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 341
                :* * ** *** **  ***  ****** ****** ******    * * * **** *   ******* **   *** ** * ****    ** **   *  :
4a36_A_1       7:KARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDS: 106
SecStr          :   HHHHHHHHHHHTT  EEEE  TTS HHHHHHHHHHHHHTT  SS    EEEEESSHHHHHHHHHHHHHHHTTTT  EEEE TTTGGGS HHHHHHH :    
ExpBur          :eeeebbebbbebbbeebbbbbbbebebebeebbbbbbeebbeebeeeeebbbbbbbbebbbbebbbeebeeebeeeebebebbbeeebeeeebeebbeeb:    

queryA       342:DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT: 441
                :***  *******    **  ****************   ****  *  ** **    *  ***  ********* ***  *    ** **  **   * *:
4a36_A_1     107:DIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSAS-QLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAIST: 205
SecStr          :SEEEE HHHHHHHHHTSS   GGG SEEEEETGGG  TTSHHHHHHHHHHHHHHHH S-   EEEEEES    TT SSHHHHHHHHHHHHHHTT SEEE :    
ExpBur          :bbbbbbbebbbebbeeebbeebeebbbbbbbbbbebeeeeebbebbeebbebeeeeee-ebbbbbbbbbbbbbeebeeeeebbeebbebbbebbbebbbb:    
Contact         :                                    bbbb                                                            

queryA       442:VKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY: 541
                :*  *  **     **    * *  **   *  **  **  ** *   *              **** ** ***  *  *         ****** ***  :
4a36_A_1     206:VRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTI-XXXXXXXXXXXXXFGTQNYEHWIVVTQRKCRXXXXXXXEEESRICRALFIC: 304
SecStr          :  TTHHHHHHH      B  B    S  HHHHHHHHHHHHHHHHHHT --------------  SHHHHHHHHHHHHHT -------  SHHHHHHHHHH:    
ExpBur          :beeeeeebeeebeeeebeeeebeeeeeeebeebbeebbeebeeebeee--------------eeeeebeeebeebeeeee-------eeeeeebebbebb:    
Contact         :                                                                 bb  b                              

queryA       542:TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD: 641
                :* ************* **  *** **  ** **      * ** **  * **  **   * *  ******* *  **   *  ** * * ** ****** :
4a36_A_1     305:TEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVS: 404
SecStr          :HHHHHHHHHHHHHHHHS HHHHHHHHHHHHTHHHHS   HHHHHHHHHHHHSHHHHHHHHT SSSS HHHHHHHHHHHHHHHH TT  EEEE SSHHHHH:    
ExpBur          :bebbeebbbbbeebeebbbebbbeebeebbeebeeeeeeebbeebbeebeeeeeebeebbeeeebebbbbeebbebbbebbeeeeebbbbbbbeeeebbe:    

queryA       642:ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL: 741
                :***   * ** *   *** * ***       **** **  ***** * *   ************* ***** **** *** **** ****** **** * :
4a36_A_1     405:ALKKCMEENPILNYIKPGVLMGRGXXXXXXXMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILV: 504
SecStr          :HHHHHHHT TTTTTS EEEE    -------  HHHHHHHHHHHHH SSS EEEE GGGGSS   TT  EEEEES    TTHHHHTGGG  SS  EEEEE:    
ExpBur          :bbeebbeeeeebeebebbbbbeee-------eebeebeeebeebeeeeebbbbbbbebbbbbbebeebebbbbbbbeeebbebbbbbbbbbeeeeebbbb:    

queryA       742:TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRD: 792
                :**   * * *  * *** ***      * ***  *  **   *  *   **:
4a36_A_1     505:TSKTEVVENEKCNRYKEEMMNKAVEKIQKWDEETFAKKIHNLQMKERVLRD: 555
SecStr          :B  HHHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHGGG     :    
ExpBur          :bbeeebbeebeebeeebebbeebbeebeeeeeeebeeebeebbeeeeeeee:

Protein Model on 4a36_A_1_C_1 (TEMPLATE: 4a36 )

Input Residue Numbers for Focused Sites