[pdbjlvh2]Protein Model on 3zd7_A_1_F

Protein Model on 3zd7_A_1_F_1 (TEMPLATE: 3zd7 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(RIGI_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [623 aa]	PROBABLE ATP-DEPENDENT RNA HELICASE DDX58 :DDX58_HUMAN
2	b		F 1 (A)	non-polymer(ADP)	ADENOSINE-5'-DIPHOSPHATE	236N 237L 241F 242K 243P 244R 247Q 266T 267G 268C 269G 270K 271T 272F (identity: 100.0 %/90.1 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:3zd7_A_1 identity=90.1%

queryA       236:NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVE: 335
                :********************************************************************** ***********************  ****:
3zd7_A_1       7:NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAXXVPVE: 106
SecStr          : TTS     HHHHHHHHHHHTT  EEEE  TTS HHHHHHHHHHHHHHSS TT    EEEE SSHHHHHHHHHHHHHHTTTTT  EEEE TTT --  HH:    
ExpBur          :eeeeeeeeeebbebbbebbeeeebbbbbbeeebebbbbbbbbbeebbeebeeeeebbbbbbbeeeeebeebeebbeeebeeeeeebebbbeeee--eebb:    
Contact         :bb   bbbb  b                  bbbbbbb                                                               

queryA       336:QIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLD: 435
                :****************************************************************************************************:
3zd7_A_1     107:QIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLD: 206
SecStr          :HHHHT SEEEE HHHHHHHHHTTSS  GGG SEEEEETGGG STT HHHHHHHHHHHHHHTT  S   EEEEEES    TT  SHHHHHHHHHHHHHHTT:    
ExpBur          :eebeebbbbbbbbebbbebbeeeebeebeebebbbbbebeebeeeeebbebbbebbebeeeeeeeeebbbbbbbeebebeebeeeeebbeebbebbbbbb:    

queryA       436:ASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRIC: 535
                :*************************************************************** **********************          ****:
3zd7_A_1     207:ASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQSQNREFGTQKYEQWIVTVQKACMXXXXXXXXXXSRIC: 306
SecStr          :  EEE   TTHHHHTTSS   EEEEEE    S  HHHHHHHHHHHHHHHHHHHHSTTGGGS S  S  SSSHHHHHHHHHHHT   ----------  HH:    
ExpBur          :bbbbbebeeeeeebeeeeeeeeeeeeebeebeeeebeebbbebbeebbebbeeeeeebeeebeeeebebbeeebbebbeebbeeee----------eeeb:    

queryA       536:KALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVK: 635
                :****************************************************************************************************:
3zd7_A_1     307:KALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVK: 406
SecStr          :HHHHHHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHH   SSHHHHHHHHHHHHHHHHHHHH GGG  HHHHHHHHHHHHHHHH TT  EEEE S:    
ExpBur          :ebbebbbebbeebbbbbbbbebbebebbbeebeebbeebeeeeeeeeeeebbeebeebeeebeebbeeeebebebbeebbebbeebbeeeeebebbbbbe:    

queryA       636:TRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG: 735
                :***************************                             **** ************************            ***:
3zd7_A_1     407:TRALVDALKNWIEGNPKLSFLKPGILTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNILILTSVADEGIDIAQCNLVILYEYVGNXXXXXXXXXXXXARG: 506
SecStr          :SHHHHHHHHHHHTT GGGTT  EEE  -----------------------------  SEEEESS SS  GGGSSEEEEES    ------------  S:    
ExpBur          :eebbbebbeebbeebeebeebebbeee-----------------------------eebbebbeeeeeeeeeebbbbbbbbeebe------------eee:    

queryA       736:SKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLG: 835
                :**********************************************************         ************************* *******:
3zd7_A_1     507:SKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSXXXXXXXXXKENKKLLCRKCKALACYTADVRVIEDCHYTVLG: 606
SecStr          : EEEEEES HHHHHHHHHHHHHHHHHHHHHHHHHTS HHHHHHHHHHHHHHHHHHHH ---------    EEEETTT  EEEEGGGEEEETTTEEEE S:    
ExpBur          :bbbbbbbbeeebbeebeeeeeeeebbeebbeebeeeeeeebeeebeeebeebbeeeee---------eeebebbbeeeeeebbebeebbbbeeeebbbee:    

queryA       836:DAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 922
                :*************************************************************  ************************:
3zd7_A_1     607:DAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDXXTGVQTLYSKWKDFHFEKIPFDPAE: 693
SecStr          :SHHHHTEEEEEEEEEEE SSSEEEEEEEESSTTT  EEEEEEEETTEEEEEE GGGEEEE --   EE  S TTT  S   B  S  :    
ExpBur          :eebeeebeebeeeeebeeeebeeebbbebebeeeeeebbbbbbbeeeebbbbebebbbbee--eeeeeeeeebeebebeeeeeeeee:

Protein Model on 3zd7_A_1_F_1 (TEMPLATE: 3zd7 )

Input Residue Numbers for Focused Sites