[pdbjlvh2]Protein Model on 2ykg_A_1_D

Protein Model on 2ykg_A_1_D_1 (TEMPLATE: 2ykg )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(RIGI_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [636 aa]	PROBABLE ATP-DEPENDENT RNA HELICASE DDX58 :DDX58_HUMAN
2	b		D 1 (A)	non-polymer(ZN)	ZINC ION	810C 813C 864C 869C (identity: 100.0 %/92.1 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:2ykg_A_1 identity=92.1%

queryA       236:NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVE: 335
                :****  **************************************************************** *****************************:
2ykg_A_1       7:NLYSXXKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVE: 106
SecStr          : TT --   HHHHHHHHHHHTT  EEEE  TTSSHHHHHHHHHHHHHHHS TT    EEEE SSHHHHHHHHHHHHHHTTTTT  EEEE SSS SSS HH:    
ExpBur          :eeee--eeeebbebbbebbeeeebbbbbbeeebbbbebbbbbbeebbeeeeeeeebbbbbbbeeeeebeebeebbeeebeeeeeebebbbeeeeeeeebe:    

queryA       336:QIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLD: 435
                :*********************************************************************************** ****************:
2ykg_A_1     107:QIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLD: 206
SecStr          :HHHHT SEEEE HHHHHHHHHTTSS  GGG SEEEEETGGG STT HHHHHHHHHHHHHHTT  S   EEEEEES    SS  SHHHHHHHHHHHHHHTT:    
ExpBur          :ebbeebbbbbbbbebbbebbeeeebeebeebbbbbbbebeebeeeeebbebbbebbebeeeeeeeeebbbbbbbeebebeebeeeeebbeebbbbbbbbb:    

queryA       436:ASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRIC: 535
                :***************************************************************************************      *******:
2ykg_A_1     207:ASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVXXXXXXDEESRIC: 306
SecStr          :  EEE   TTHHHHHHHS   EEEEEE    S  HHHHHHHHHHHHHHHHHHHHSTTGGGSSS  S  SSSHHHHHHHHHHHHTS  ------  HHHHH:    
ExpBur          :bbbbbebeeeeeebeeeeeeeeeeeeebeebeeeebeebbbebbeebbebbeeebeebeebbeeeebebbeeebeebbeebeeebee------eebeeeb:    

queryA       536:KALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVK: 635
                :****************************************************************************************************:
2ykg_A_1     307:KALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVK: 406
SecStr          :HHHHHHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHTT   HHHHHHHHHHHTTHHHHHHHHH GGG  HHHHHHHHHHHHHHTT TT  EEEE S:    
ExpBur          :ebbebbbbbbeebbbbbbbbebbebebbbeebeebbeebeeeebeebbeebbeebeeebeebbebbeeeebebebbeebbebbeebbeeeeebebbbbbe:    

queryA       636:TRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG: 735
                :*************************                             **************   ************  ****         **:
2ykg_A_1     407:TRALVDALKNWIEGNPKLSFLKPGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHNILIATSVADEGXXXAQCNLVILYEYVXXVIKMXXXXXXXXXRG: 506
SecStr          : HHHHHHHHHHHHH TT  S  EE -----------------------------  S SEEEESS   ---   SEEEEES  --    ---------  :    
ExpBur          :eebbbebbbebbeebeebeebebbe-----------------------------eeeeebebeeeeee---eebebbbbbbee--eeee---------ee:    

queryA       736:SKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLG: 835
                :******************************************************************************************** *******:
2ykg_A_1     507:SKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEDCHYTVLG: 606
SecStr          : EEEEEES HHHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHHHT         S EEEEESSS  EEEEGGGEEEETTTEEEE S:    
ExpBur          :bebbbbbeeeeebeeeeeeeeeeebbeebbeebeeeeeeebeeebeeebeeeeeeeeeeeeeeeeeeeeebbbbbbeeeeebbebeebbbbeeeebbbee:    
Contact         :                                                                          b  b                      

queryA       836:DAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 922
                :***************************************************************************************:
2ykg_A_1     607:DAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 693
SecStr          :TTGGGTEEEEEEEEEEE SS EEEEEEEESSTTT  EEEEEEEETTEEEEEE GGGEEEEETTT  EEE S GGG  S   B  S  :    
ExpBur          :eebeeebeeeebeeeeeeeebebebbbbbeeeebeeebbbbbebeeeebbbbebebbbbbeeeeeeeeeeeebeebebeeeebeeee:    
Contact         :                            b    b

Protein Model on 2ykg_A_1_D_1 (TEMPLATE: 2ykg )

Input Residue Numbers for Focused Sites