Protein Model on 8a0y_C_1_M_1
(TEMPLATE: 
8a0y
)Protein Model on 8a0y_C_1_M_1
(TEMPLATE: 8a0y
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(BASI_HUMAN) | C 1 (C) | polymer(polypeptide(L)) [574 aa] | Contactin-2 :CNTN2_MOUSE | |
| 2 | b | M 1 (M) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 302N(F) 311Q(N) (identity: 0.0 %/32.1 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:8a0y_C_1 identity=32.1% |
queryA 36:VGGSVELHCEAVGSPVPEIQWWFEGQGPNDTCSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQAVVL: 135
:** * * * * * *** * * * * * * * ** ***** * * * * * * ** *:
8a0y_C_1 229:VGQQVTLECFAFGNPVPRIKW----RKVDGSLSPQWGTAE---------------PTLQIPSVSFEDEGTYECEAENSKGRD--TVQGRI-IVQAQPEWL: 306
SecStr :TT EEEE EEE SS EEEE----EETTB SSS S---------------SEEEESS GGG EEEEEEEEETTEEE--EEEEEE-EEE EEE:
ExpBur :eeeebebbbbbbbbeebebeb----ebeeeeebeebeeee---------------eebebeebeeebeeebbbbbebeeeee--ebebeb-bbbbebeee:
queryA 136:VLEPGTVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVL----KEDALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTA------NIQLHGPP-RVK: 224
: * * ** * *** * * * * * * * * ** ** * * * :
8a0y_C_1 307:KV----ISDTEADIGSNLRWGCAAAGKPRPMV--RWLRNGEPLASQNRVEVLAGDLRFSKLNLEDS-GMYQCV-AENKHGTIYASAELAVQALAPDFRQN: 398
SecStr :E ---- EEEETT EEEEE EEE SS EE--EEEESSSB SSEEEETTEEEEES GGG -EEEEEE-EEETTEEEEEEEEEEEE B SSS:
ExpBur :ee----beeeebebeeeeebebebeeeeebeb--ebbebbeebeeeeebeeeebebebeebeeebe-bbbbbb-bebebebbbbebbbbbebeebebeee:
queryA 225:AVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR: 319
: * * * * * * * * * * * * * * * * * * * * **:
8a0y_C_1 399:PVRRLIPAARGGEISIPCQPRAAPKAT-ILWSKGTE------ILGNSTRVTVTLD---GTLIIRNIS-RSDEGKYTCFAENFMGKANSTGILSVR: 482
SecStr : SEEE TT EEE B SS E-EEEEETTE------E S SSEEE SS---S EEE S -TTS EEEEEEEE SS EEEEEEEEE :
ExpBur :ebeeebebbeeeebebebebebbbebe-bebbeeee------ebeeeeebbeeee---bbbbbeebe-eebeeebbbebebeeeebebebebbbe:
Contact : b b
|
[assembly_id:2]
[help]