[pdbjlvh2]Protein Model on 8w6r_A_1_B

Protein Model on 8w6r_A_1_B_1 (TEMPLATE: 8w6r )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(ASM_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [411 aa]	Acid sphingomyelinase-like phosphodiesterase 3a :ASM3A_MOUSE
2	b		B 1 (B)	branched(oligosaccharide)	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	520I(Y) 522N 524T 525Q(E) 579G(S) (identity: 40.0 %/34.4 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8w6r_A_1 identity=34.4%

queryA       200:VSRILFLTDLHWDHDYLEGTDPDCADPLCCRRGSGLPPASRPGAGYWGEYSKCDLPLRTLESLLSGLGPAG-PFDMVYWTGDIPAHD-VWHQTRQDQLRA: 297
                :*      **** *  *   ** *         *     ** **    *    ** *     *        *       **** * *  *           :
8w6r_A_1      12:VGQFWHVTDLHLDPTY-HITD-DRTKVCASSKGAN---ASNPGP--FGD-VLCDSPYQLILSAFDFIKNSGQEASFMIWTGDSPPHVPVPELSTGTVIKV: 103
SecStr          : EEEEEE    B TT -   S-SGGGS GGGTTS --- SS BT--TB -TTS B HHHHHHHHHHHHHS    SEEEE    S S  GGG  HHHHHHH:    
ExpBur          :ebbbbbbbbbbbbeeb-eeee-eeeebbebbeeee---beebbe--bbb-bbbbbbeebbebbbebbeeeeeeebbbbbbbbbbbebeeeebebeebeeb:    

queryA       298:LTTVTALVRKFLGPVPVYPAVGNHESTPVNSFPPPFIEGNHSSRWLYEAMAKAWEPWLPAEALRTLRIGGFYA--LSPYPGLRLISLNMNFCSRENFWLL: 395
                : *  *  *        * ** ***   *    *             * * *  * ***  **  **  ****       **** **** *     *    :
8w6r_A_1     104:ITNMTMTVQNLFPNLQVFPALGNHDYWPQDQLPI-------VTSKVYSAVADLWKPWLGEEAISTLKKGGFYSQKVASNPGLRIISLNTNLYYGPNI-MT: 195
SecStr          :HHHHHHHHHHH TT EEEE   TTSSSSTT   S-------S  HHHHHHHHHHGGG  HHHHHHHHHHS EEEE TTSTTEEEEE  GGGG TT G-GG:    
ExpBur          :beebbebbbebbeebbbbbbbbbbbbeeebbbbe-------eebebbebbbebbeebbeeebbebbeebbbbbbebeebeebbbbbbbbbbbbeebe-eb:    

queryA       396:INSTDPAGQLQWLVGELQAAEDRGDKVHIIGHIPPGH---------CLKSWSWNYYRIVARYENTLAAQFFGHTHVDEFEVFYDEETLSRPLAVAFLAPS: 486
                : * **** *  **   *        ** ** * * *                     *  **    * ** **** *   *  *      **   * ** :
8w6r_A_1     196:LNKTDPANQFEWLENTLNSSLWNKEKVYIIAHVPVGYLPYATDTPAIRQYYNEKLLDIFRRYSSVIAGQFYGHTHRDSLMVLSDKN--GNPLNSVFVAPA: 293
SecStr          :TT SSGGGHHHHHHHHHHHHHHTT EEEEEESS SSB TTSSS BSS HHHHHHHHHHHHHTTTTEEEEEE SS S EEEEEE TT--S EEEEEEE   :    
ExpBur          :eeeebbbebbebbeebbeebeeeebebbbbbbbbbbbbbebeeeebbbeebbeebbebbbebbebbebbbbbbbbbbbbbbbbeee--eeeebbbbbbbb:    

queryA       487:ATTYIGL------NPGYRVYQIDGNYSGSSHVVLDHETYILNLTQANIPGAIPHWQLLYRARETYGLPNTLPTAWHNLVYRM-RGDMQLFQTFWFLYHKG: 579
                : *   *       *** *  *    *       **   * **** **  *    * * *     *      *     **      *   *      *   :
8w6r_A_1     294:VTPVKGVLQKETNNPGVRLFQ----YKPGDYTLLDMVQYYLNLTEANLKGE-SNWTLEYVLTQAYSVADLQPKSLYALVQQFATKDSKQFLKYYHYYFVS: 388
SecStr          :S     SS S     EEEEEE----E TTT  EEEEEEEE  HHHHHHHTS-   EEEEEHHHHHT S SSHHHHHHHHHHHHSTT HHHHHHHHHHTTT:    
ExpBur          :bbbbbeeeeebbbbbbbbbbb----beeeebebebbbbbbbebeebbeeee-eebeebbbbbebbebebbeeebbeebbeebeeeebebbeebbebbbbe:    
Contact         :                                       b b bb                                                      b

queryA       580:HPPSEPCGTPCRLATLCAQLSARADSPALC: 609
                :   *  *   *     **       *   *:
8w6r_A_1     389:YDSSATCDQHCKTLQVCAIMNLDSMSYDDC: 418
SecStr          :S TT    HHHHHHHHHHHH  SHHHHHHH:    
ExpBur          :eeeebebeeebbbbbbbbbbbbbbebbeeb:

Protein Model on 8w6r_A_1_B_1 (TEMPLATE: 8w6r )

Input Residue Numbers for Focused Sites