Protein Model on 8w6p_A_1_C_1 (TEMPLATE: 8w6p )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(ASM_HUMAN) A 1 (A) polymer(polypeptide(L)) [412 aa] Acid sphingomyelinase-like phosphodiesterase 3a :ASM3A_MOUSE
2 b C 1 (C) branched(oligosaccharide) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 525Q(E) 529P(K) 534H(N) 536Q(T) (identity: 0.0 %/34.6 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:8w6p_A_1 identity=34.6%
queryA       200:VSRILFLTDLHWDHDYLEGTDPDCADPLCCRRGSGLPPASRPGAGYWGEYSKCDLPLRTLESLLSGLGPAG-PFDMVYWTGDIPAHD-VWHQTRQDQLRA: 297
                :*      **** *  *   ** *         *     ** **    *    ** *     *        *       **** * *  *           :
8w6p_A_1       2:VGQFWHVTDLHLDPTY-HITD-DRTKVCASSKGAN---ASNPGP--FGD-VLCDSPYQLILSAFDFIKNSGQEASFMIWTGDSPPHVPVPELSTGTVIKV:  93
SecStr          : EEEEEE    B TT -   S- TTSS GGGTTS --- SS BT--TB -TTS B HHHHHHHHHHHHTS    SEEEE    S S  GGG  HHHHHHH:    
ExpBur          :ebbbbbbbbbbbbeeb-eeee-eeeebbebbeeee---beeebe--bbb-bbbbbbeebbebbbebbeeeeeeeebbbbbbbbbbebeeeebeeeebeeb:    

queryA       298:LTTVTALVRKFLGPVPVYPAVGNHESTPVNSFPPPFIEGNHSSRWLYEAMAKAWEPWLPAEALRTLRIGGFYA--LSPYPGLRLISLNMNFCSRENFWLL: 395
                : *  *  *        * ** ***   *    *             * * *  * ***  **  **  ****       **** **** *     *    :
8w6p_A_1      94:ITNMTMTVQNLFPNLQVFPALGNHDYWPQDQLPI-------VTSKVYSAVADLWKPWLGEEAISTLKKGGFYSQKVASNPGLRIISLNTNLYYGPNI-MT: 185
SecStr          :HHHHHHHHHHH TT EEEE   TTSSSSTT   S-------S  HHHHHHHHHTGGG  HHHHHHHHHHS EEEE TTSTTEEEEE  GGGG TT T-TS:    
ExpBur          :beebbebbbeebeebbbbbbbbbbbbeeebbbbe-------eebebbbbbbebbeebbeeebbebbeebbbbbbebeebeebbbbbbbbbbbbeebe-eb:    

queryA       396:INSTDPAGQLQWLVGELQAAEDRGDKVHIIGHIPPGH---------CLKSWSWNYYRIVARYENTLAAQFFGHTHVDEFEVFYDEETLSRPLAVAFLAPS: 486
                : * **** *  **   *        ** ** * * *                     *  **    * ** **** *   *  *      **   * ** :
8w6p_A_1     186:LNKTDPANQFEWLENTLNSSLWNKEKVYIIAHVPVGYLPYATDTPAIRQYYNEKLLDIFRRYSSVIAGQFYGHTHRDSLMVLSDKN--GNPLNSVFVAPA: 283
SecStr          :TT SSGGGHHHHHHHHHHHHHHTT EEEEE SS SSB TTSSS BSS HHHHHHHHHHHHHTTTTEEEEEE SS S EEEEEE TT--S EEEEEEE   :    
ExpBur          :eeeeebbebbebbeebbeebeeeebebbbbbbbbbbbbbebeeeebbbeebbeebbebbeebbebbebbbbbbbbbbbbbbbbeee--eeeebbbbbbbb:    

queryA       487:ATTYIGL------NPGYRVYQIDGNYSGSSHVVLDHETYILNLTQANIPGAIPHWQLLYRARETYGLPNTLPTAWHNLVYRM-RGDMQLFQTFWFLYHKG: 579
                : *   *       *** *  *    *       **   * **** **  *    * * *     *      *     **      *   *      *   :
8w6p_A_1     284:VTPVKGVLQKETNNPGVRLFQ----YKPGDYTLLDMVQYYLNLTEANLKGE-SNWTLEYVLTQAYSVADLQPKSLYALVQQFATKDSKQFLKYYHYYFVS: 378
SecStr          :S     SS S     EEEEEE----E TTT  EEEEEEEE  HHHHHHHTS-   EEEEEHHHHHT S  SHHHHHHHHHHHHSTT HHHHHHHHHHTTT:    
ExpBur          :bbbbbeeeeebbbbbbbbbbe----beeeebbbebbbbbbbebeebbeeee-eebeebbbbbebbebebbeeebbeebbeebeeeebebbeebbebbbbe:    
Contact         :                                            b   b    b b                                            

queryA       580:HPPSEPCGTPCRLATLCA--QLSARADSPALCRHL: 612
                :   *  *   *     **   *        *  **:
8w6p_A_1     379:YDSSATCDQHCKTLQVCAIMNLDSMSYDDCLKQHL: 413
SecStr          :S TT    HHHHHHHHHHHH  SHHHHHHHHHHH :    
ExpBur          :eeeebebeeeebbbbbbbbbebbbebbeebbeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123