[pdbjlvh2]Protein Model on 5fib_A_1_U

Protein Model on 5fib_A_1_U_1 (TEMPLATE: 5fib )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(ASM_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [534 aa]	Sphingomyelin phosphodiesterase :ASM_MOUSE
2	b		U 1 (A)	non-polymer(SO4)	SULFATE ION	230R 231R 232G 233S 234G 235L(W) (identity: 83.3 %/88.4 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5fib_A_1 identity=88.4%

queryA        88:NLTCPICKGLFTAINLGLKKEPNVARVGSVAIKLCNLLKIAPPAVCQSIVHLFEDDMVEVWRRSVLSPSEACGLLLGSTCGHWDIFSSWNISLPTVPKPP: 187
                :***** ** **** * ***************** *  * ***  **** ******* **** **************** ******** ****** *****:
5fib_A_1      11:NLTCPACKVLFTALNHGLKKEPNVARVGSVAIKICKMLNIAPLDVCQSAVHLFEDDVVEVWTRSVLSPSEACGLLLGSSCGHWDIFSTWNISLPSVPKPP: 110
SecStr          :TTHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHTT S HHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHH TTT    TT        SS    :    
ExpBur          :eeebeebeeebeeebeeeeeeeebeeebeebeeebeeeeeeeeebbeebeeeebebebebebebbbeeebbbbeeeeeebeeeebeeebebeeeeeeeee:    

queryA       188:PKPPSPPAPGAPVSRILFLTDLHWDHDYLEGTDPDCADPLCCRRGSGLPPASRPGAGYWGEYSKCDLPLRTLESLLSGLGPAGPFDMVYWTGDIPAHDVW: 287
                :*************** ********** ******* ************ ** *  *** ****************** ******** **************:
5fib_A_1     111:PKPPSPPAPGAPVSRVLFLTDLHWDHEYLEGTDPYCADPLCCRRGSGWPPNSQKGAGFWGEYSKCDLPLRTLESLLKGLGPAGPFEMVYWTGDIPAHDVW: 210
SecStr          :        TT  EEEEEEE    B TTB TTS TT SSSS SBTTS   STT     SS  SSS  B HHHHHHHHHTHHHH   SEEEE    B S GG:    
ExpBur          :eeeeeeeeeebeebebbbbbbbbbbebbeeebbbebebebbbbeebeeeeeeeeebbebbbbbebbbbeebbebbbeebeebbebebbbbbbbbbbbbeb:    
Contact         :                                          bbbbbb                                                    

queryA       288:HQTRQDQLRALTTVTALVRKFLGPVPVYPAVGNHESTPVNSFPPPFIEGNHSSRWLYEAMAKAWEPWLPAEALRTLRIGGFYALSPYPGLRLISLNMNFC: 387
                : * ********** * ************************ ****** ** ** **************** ** ********** * *************:
5fib_A_1     211:QQSRQDQLRALTTITDLVRKFLGPVPVYPAVGNHESTPVNGFPPPFIKGNQSSQWLYEAMAKAWEPWLPADALHTLRIGGFYALTPRPGLRLISLNMNFC: 310
SecStr          :G  HHHHHHHHHHHHHHHHHHHTTS EEE   SSSSSSTT    TT  STTSSHHHHHHHHHHTTTTS HHHHHHHHHHS EEEEEETTEEEEE  GGGG:    
ExpBur          :ebeeebbeebbeebbebbeeebeeeebbbbbbbbbbbbbbbbbbeebeeeebbebbbebbbebbeebbeeebbeebeebbbbbbebbeebbbbbbbbbbb:    

queryA       388:SRENFWLLINSTDPAGQLQWLVGELQAAEDRGDKVHIIGHIPPGHCLKSWSWNYYRIVARYENTLAAQFFGHTHVDEFEVFYDEETLSRPLAVAFLAPSA: 487
                :********************** ****** ************************* * ******** ************ ********************:
5fib_A_1     311:SRENFWLLINSTDPAGQLQWLVEELQAAENRGDKVHIIGHIPPGHCLKSWSWNYYKIIARYENTLAGQFFGHTHVDEFEIFYDEETLSRPLAVAFLAPSA: 410
SecStr          :BTT GGGTT  SSGGGHHHHHHHHHHHHHHHT EEEEE SS GGGB HHHHHHHHHHHHHTTTTEEEEEE SS S EEEEEE TTTS SEEEEEEE   S:    
ExpBur          :beebbbbbbebebbeebbebbbebbbebbeeebebbbbbbbbbbebbebbbebbbbbbbbbbbbbbbbbbbebbbbbbbbbbbeeebeeebbbbbbbbbb:    

queryA       488:TTYIGLNPGYRVYQIDGNYSGSSHVVLDHETYILNLTQANIPGAIPHWQLLYRARETYGLPNTLPTAWHNLVYRMRGDMQLFQTFWFLYHKGHPPSEPCG: 587
                :** * ************** ********************  *  * *  ***********   *  ********* * *********************:
5fib_A_1     411:TTFINLNPGYRVYQIDGNYPGSSHVVLDHETYILNLTQANAAGGTPSWKRLYRARETYGLPDAMPASWHNLVYRMRDDEQLFQTFWFLYHKGHPPSEPCG: 510
SecStr          :S TTT   EEEEEEEE SSTT    EEEEEEEE  HHHHSSTT     EEEEEHHHHHT S SSHHHHHHHHHHHHH HHHHHHHHHHHTTT   SS   :    
ExpBur          :bbbeebbbbbbbbebbbeeeebbbbbbbbbbbbbbbeebeeeeeeeebeebbebeeebebeebbbebbeebbbebeeeeebbeebbebbbbbeeeeeebe:    

queryA       588:TPCRLATLCAQLSARADSPALCRHLM: 613
                :**************************:
5fib_A_1     511:TPCRLATLCAQLSARADSPALCRHLM: 536
SecStr          :HHHHHHHHHHHH  SSS GGGGTTT :    
ExpBur          :eeeeeebbbebbbbbbebeebbeebe:

Protein Model on 5fib_A_1_U_1 (TEMPLATE: 5fib )

Input Residue Numbers for Focused Sites