[pdbjlvh2]Protein Model on 5fi9_A_1_G

Protein Model on 5fi9_A_1_G_1 (TEMPLATE: 5fi9 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(ASM_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [523 aa]	Sphingomyelin phosphodiesterase :ASM_MOUSE
2	b		G 1 (G)	branched(oligosaccharide)	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	177N 178I 179S (identity: 100.0 %/87.5 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5fi9_A_1 identity=87.5%

queryA        88:NLTCPICKGLFTAINLGLKKEPNVARVGSVAIKLCNLLKIAPPAVCQSIVHLFEDDMVEVWRRSVLSPSEACGLLLGSTCGHWDIFSSWNISLPTVPKPP: 187
                :***** ** **** * ***************** *  * ***  **** ******* **** **************** *     ** ****** *****:
5fi9_A_1      11:NLTCPACKVLFTALNHGLKKEPNVARVGSVAIKICKMLNIAPLDVCQSAVHLFEDDVVEVWTRSVLSPSEACGLLLGSSCXXXXXFSTWNISLPSVPKPP: 110
SecStr          :S  HHHHHHHHHHHHHHHTT S HHHHHHHHHHHHHHHT S HHHHHHHHHHHTSSHHHHHHTTS  HHHHHHHHH TT -----         SS    :    
ExpBur          :ebebebbeebbebbeebeeeeeeeeebbeebeeebeeeeebeeebbeebbeebbeeeeebbebeebeeeebbeeebeeee-----eeebebeeeeeeeee:    
Contact         :                                                                                         bbb        

queryA       188:PKPPSPPAPGAPVSRILFLTDLHWDHDYLEGTDPDCADPLCCRRGSGLPPASRPGAGYWGEYSKCDLPLRTLESLLSGLGPAGPFDMVYWTGDIPAHDVW: 287
                :*************** ********** ******* ************ ** *  *** ****************** ******** **************:
5fi9_A_1     111:PKPPSPPAPGAPVSRVLFLTDLHWDHEYLEGTDPYCADPLCCRRGSGWPPNSQKGAGFWGEYSKCDLPLRTLESLLKGLGPAGPFEMVYWTGDIPAHDVW: 210
SecStr          :        TT  EEEEEEE    B TTB TTS TT SSSS SBTTS   STT     SS  SSS  B HHHHHHHHHTTGGG   SEEEE    B S GG:    
ExpBur          :eeeeeeeeeebeebebbbbbbbbbbeebeeebbbebeeebbbbeebeeeeeeeebbbebbbbbebbbbeebbebbbeebeebbebebbbbbbbbbbbbee:    

queryA       288:HQTRQDQLRALTTVTALVRKFLGPVPVYPAVGNHESTPVNSFPPPFIEGNHSSRWLYEAMAKAWEPWLPAEALRTLRIGGFYALSPYPGLRLISLNMNFC: 387
                : * ********** * ************************ ****** ** ** **************** ** ********** * *************:
5fi9_A_1     211:QQSRQDQLRALTTITDLVRKFLGPVPVYPAVGNHESTPVNGFPPPFIKGNQSSQWLYEAMAKAWEPWLPADALHTLRIGGFYALTPRPGLRLISLNMNFC: 310
SecStr          :G  HHHHHHHHHHHHHHHHHHHTTS EEE   SSSSSSTT    TT  STTSTHHHHHHHHHHTTTTS HHHHHHHHHHS EEEEEETTEEEEE  GGGG:    
ExpBur          :ebeeebbeebbeebbebbeeebeeeebbbbbbbbbbbebbbbbbeebeeeebbebbbebbbebbeebbeeebbeebeebbbbbbeebeebbbbbbbbbbb:    

queryA       388:SRENFWLLINSTDPAGQLQWLVGELQAAEDRGDKVHIIGHIPPGHCLKSWSWNYYRIVARYENTLAAQFFGHTHVDEFEVFYDEETLSRPLAVAFLAPSA: 487
                :********************** ****** ************************* * ******** ************ ********************:
5fi9_A_1     311:SRENFWLLINSTDPAGQLQWLVEELQAAENRGDKVHIIGHIPPGHCLKSWSWNYYKIIARYENTLAGQFFGHTHVDEFEIFYDEETLSRPLAVAFLAPSA: 410
SecStr          : SS GGGGS  SSGGGHHHHHHHHHHHHHHHT EEEEE SS GGGS HHHHHHHHHHHHHTTTTEEEEEE SS S EEEEEE TTTS SEEEEEEE   S:    
ExpBur          :beebebbeeebebbeebbebbbebbbebbeeebebbbbbbbbbbebbebbbebbbbbbbbbbebbbbbbbbebbbbbbbbbbbeeeeeebbbbbbbbbbb:    

queryA       488:TTYIGLNPGYRVYQIDGNYSGSSHVVLDHETYILNLTQANIPGAIPHWQLLYRARETYGLPNTLPTAWHNLVYRMRGDMQLFQTFWFLYHKGHPPSEPCG: 587
                :** * ************** ********************  *  * *  ***********   *  ********* * *********************:
5fi9_A_1     411:TTFINLNPGYRVYQIDGNYPGSSHVVLDHETYILNLTQANAAGGTPSWKRLYRARETYGLPDAMPASWHNLVYRMRDDEQLFQTFWFLYHKGHPPSEPCG: 510
SecStr          :S TTT   EEEEEEEE SSTT    EEEEEEEEE HHHHSSTT    EEEEEEHHHHHT S S HHHHHHHHHHHHH HHHHHHHHHHHTTS   SS   :    
ExpBur          :bbbeebbbbbbbbbbbbeeeebbbbbbbbbbbbbbbeebbeeeeeeebeebbebeeebebeebbbebbeebbbebeeeeebbeebbebbbbbbeeeeebe:    

queryA       588:TPCRLATLCAQLSARADSPALCRHLM: 613
                :**************************:
5fi9_A_1     511:TPCRLATLCAQLSARADSPALCRHLM: 536
SecStr          :HHHHHHHHHHHT  SSS GGGGTT  :    
ExpBur          :eeebbebbbebbebbbebeebbeebe:

Protein Model on 5fi9_A_1_G_1 (TEMPLATE: 5fi9 )

Input Residue Numbers for Focused Sites