Protein Model on 7ytx_A_1_S_1 (TEMPLATE: 7ytx )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR3_HUMAN) A 1 (A) polymer(polypeptide(L)) [749 aa] Toll-like receptor 8 :TLR8_HUMAN
2 b S 1 (B) non-polymer(JRI) (2R,6R)-4-(8-cyanoquinolin-5-yl)-N-[(3S,4R)-4-fluoranylpyrrolidin-3-yl]-6-methyl-morpholine-2-carboxamide 420S(F) 421K(F) 444G(A) 445Q (identity: 25.0 %/31.1 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7ytx_A_1 identity=31.1%
queryA        34:VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS--------------KLEPELCQKLPMLKVLNLQHNELSQLSDKTF: 119
                : * **   *  **       * * *  *         *     **      *                          *  *  * *  * * *      :
7ytx_A_1      24:IAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXNGLNITDGAFLNLKNLRELLLEDNQLPQIPS---: 120
SecStr          :EEE TTS  SS  TTS SSEEEEE  SS   EE TTTSTT TT  EE  TT S  -----------   EE TTTTTT TT  EEE  SS  SS  S---:    
ExpBur          :bbebeebebeebbeebeeebbebebbebebeebeeebbeebeebebbbbbebbee-----------eebebeebbbeebeebebbbbbebebeebbe---:    

queryA       120:AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN-----------------------------LQELLLSNNKIQALKSEE: 190
                :     **** *  * *  *         **  * *  *     *       *                              *  * ***  *     * :
7ytx_A_1     121:GLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFN-KVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNTQIKYISEED: 219
SecStr          :S  TT  EEE  SS   EE HHHHTT TT  EEE  SSSSS -SS SS EE TTTTTT TT  EEE  S   SS  SS  TT  EEE SSS   EE STT:    
ExpBur          :ebbebbeebbbbebebeebeeebbbebeebebbebbbbbbee-eebeebebeebbbeebeebebbbbbbbbbeebbeebbeebeebebbbbebeebeeee:    

queryA       191:LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--NV: 288
                :     *  *  * ** *      * ** *              * *           *  * * **   *       *       *  ***  * *    :
7ytx_A_1     220:FKGLINLTL--LDLSGN-----CPRCFNAPFPCVP-----CDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMP--HLKVLDLEFNYLVGEI: 305
SecStr          :SSS TT  E--EE TTS-----S   SS SS    ----- SSS   EE TTTTSS TT  EEE  SS  S   TTTTTT S--   EEE  SS  HHHH:    
ExpBur          :beebeebbb--bbbbbb-----bbbeeeeebeeee-----beeeeebebeeebbeebeebeebbbbbbbbeebbeebbeebe--ebebbbbbbbebeebb:    

queryA       289:VGNDSFAWLPQLEYFFLEYNNI-----QHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMFTGLINL: 381
                :        ** **   *  * *     **   *     *   * * * *    *          ***     *  *   *   * *  *    *    **:
7ytx_A_1     306:ASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHL-RGYVFQEL------REDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNL: 398
SecStr          :HS SGGGS SS  EEE  S   TT   SB    GGGTT TT  EEE - S   SEE------ GGGGGGGTT SS  EEE TT    EE GGGGTT SS :    
ExpBur          :eebebbeebeebeebbbbbbeeeeeeeeebebbeebeebeebebbbb-bbbbbbeb------eeebbebbbebeebbbbbbbbbebeebebebbeebeeb:    

queryA       382:KYLSL---------------------------------------SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE: 442
                :    *                                       **     * *               * *  * *  *    *  *     * *  * :
7ytx_A_1     399:EIIYLSENRISPLVKXXXXXXXXXXXXXXXXXXXXXXXXXFDPHSNFYHFTRPLIKPQCAAYGKA----LDLSLNSIFFIGPNQFENLPDIACLNLSANS: 494
SecStr          : EEE TTS       -------------------------  SSS SSS  S SS HHHHTTS E----EE  SS  SS  TTSSTT    SEEE  SS :    
ExpBur          :eebbbbebebebeee-------------------------eeeeeeebbeeeebbeeebeeeeeb----bbbbebebeebbeebbeebbebbbbbbbebe:    
Contact         :                                                                             bb                     

queryA       443:IGQELTGQEWRGLENIFEIYLSYNKYLQLTRN--SFALVPSLQRLMLRRV----------ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM-LEGL: 529
                :  * * * *               *** ** *   *     *  *    *              *       *   **  * ** ***    *   **  :
7ytx_A_1     495:NAQVLSGTEFSAIPHV--------KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESK: 586
SecStr          :   B  S TTTTS   --------SEEE  SB  B  STTTTTT TT  EEE  SB  S   TTTSS  GGGGS SS  EEE  SS      S S    S:    
ExpBur          :bebebebebbeebeeb--------ebbbbbebebbbbeeebbbbbeebebbbbbebebeeeeeeebbbbebbeebeebeebbbbebebebbeeeeebebe:    
Contact         : bb                                                       b                                         

queryA       530:EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF----KDLFELKIID---------------------------------: 592
                :   *      * *  **        *   ***  *  * *  *    ** * *      * ** * *                                 :
7ytx_A_1     587:SLVELV-FSGNRLDILW-NDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDS: 684
SecStr          :S  EEE-  SS HHHHH-T TT TTSSSSTT TT  EEE  SS  S   HHHHTTS TT SEEE  SS  S   GGGGGG SS  EEE  SS      S :    
ExpBur          :bbeebb-bbbbebbebb-ebeeeebbbbbebbeebebbbbbebebeebeeebbebbbebbeebbbbebebeebebebbeebeebeebbbeebebeebbee:    

queryA       593:------------LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF-GPAFRNLTELDMRFNPFDCTCESIAWFVNWINE-THTNIPELSSHYLCN: 678
                :            *  *    **        *** * *  **     *          *  *    *** ***  *  *  *  *     ** *     * :
7ytx_A_1     685:LSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCD-IGDFRRWMDEHLNVKIPRLVD-VICA: 782
SecStr          :TTTT SS  EEE  SS      SSSSSSS   SEEE  SS      SSSS  SS     EEE  S  B  SSG-GGTHHHHHHH TTSB   TTS-  B :    
ExpBur          :bbebbebbeebbbbebebeebbeebbbeebbbeebbbbebebeebeeebbeeeeebebeebbbbebebebeee-bbebeebbeebeebebbebbe-bebe:    

queryA       679:TPPHYHG: 685
                : *    *:
7ytx_A_1     783:SPGDQRG: 789
SecStr          :SSTTT S:    
ExpBur          :ebeeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123