Protein Model on 7wm4_A_1_L_1 (TEMPLATE: 7wm4 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR3_HUMAN) A 1 (C) polymer(polypeptide(L)) [661 aa] Toll-like receptor 3 :TLR3_MOUSE
2 b L 1 (L) branched(oligosaccharide) beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 387S 413N 415T 437D (identity: 100.0 %/77.8 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7wm4_A_1 identity=77.8%
queryA        28:CTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE: 127
                :***   **********  ***** ****************  ********  ** *** ********** ** ************* ** ** *******:
7wm4_A_1       4:CTVRYNVADCSHLKLTHIPDDLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTE: 103
SecStr          :    SSB   S     S    S S  SEEE  SS  S   SSTTSS    SEEE  S       THHHHH    SEEE  S       GGGGSS  S  E:    
ExpBur          :eeeeeeebbbeeeebeebeeebeeebeebbbbebebeebbeeebeebeebeebebbebebeebbbebbeebeebeebbbeebebeeeeeebbeebeebeb:    

queryA       128:LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLF: 227
                :* ****** *** ***  ***** *************** ***********  *** ** ****    **** ** ****  ********  ** ** * :
7wm4_A_1     104:LDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALL: 203
SecStr          :EEESS       S TTSS  S  EEEE SS        SS B TT  EEE  S    EE HHHHTTB S EESEEE TT    EE TTTTTSSSEE EEE:    
ExpBur          :bbbebbebeeeeeebbeebeebeebbbbebebeebebbeeebbeebebbbbbebebebbeeebbebbeebebeebbbbebebeebeeebbeebeebbbbe:    

queryA       228:LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL: 327
                :*** ** * ****** ** **** **** * **  **  ** ******** ********  *** **  ** * *  ******* *   *  ** * ***:
7wm4_A_1     204:LNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYL: 303
SecStr          : TTS   HHHHHHHHHHTTTS   EEE  SS   EE TTSSGGGGGS   EEE TTS   EE TTTTTT SS  EEE  S    EE TTTTTT  S  EE:    
ExpBur          :beebebeeebbeebbebbbebebeebbbbebebeebeeebbbbbeebebeebebbebebeebeebbbbebeebeebbbeebebeebbeebbeebeebeeb:    

queryA       328:NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF: 427
                : *** ***      * * ********** ** *** ** **  *** ****  *******  **** ***************  ****** ****    *:
7wm4_A_1     304:SLKRAFTKXXXXXXSHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTF: 403
SecStr          :E TT S  ------   EE TTSSSS TT  EEE  S  B    TTSSTT  S  EEE TT BSS SEE TTTT GGGSS  SEEE TTS   EE TTTT:    
ExpBur          :bbeebbbe------eebebeeebbeebeebeebbbbebebbebeeebbeebeebeebbbbebbeebeebeeebbebbeebebeebebbebebeebeebbb:    
Contact         :                                                           b                         b b            

queryA       428:SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE: 527
                :**** *  ******** * * ******* ***************   ********************** ***** ******************* * **:
7wm4_A_1     404:SWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLE: 503
SecStr          :SS TT  EEE  SS  EEE  SGGGTT  S  EEE  S SEEE  TTSSSS TT SEEE TT   B   SSS TTTT  S  EEE  SS      TTTTT:    
ExpBur          :eebbebeebbbbebebebebebebbeebeebeebebbebeebbbbeebbeebeebeebbbeebebeebeeeebbbeebeebbebbbbebebeebeeebbe:    
Contact         :         b                                                                                          

queryA       528:GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK: 627
                :*** ***** *********   *****  ***************** ***** *** ***** * ******* *    *  * ** **************:
7wm4_A_1     504:GLENLEILDFQHNNLARLWXXXNPGGPVNFLKGLSHLHILNLESNGLDEIPVGVFKNLFELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKNLITSVEK: 603
SecStr          :T TT  EEE TT   STT --- TT     STT TT  EEE TTS      SSSSTT TT  EEE  SS      TTS SS TT  EEE TTS      H:    
ExpBur          :ebeebeebbbbebebbebb---eeeeebebbeebeebeebbbeebebeebbeebbeebeebebbbbbebebeebeeebbebbeebeebbbbebebeebee:    

queryA       628:KVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCK: 697
                : **** * **  *************** ******* ***** *** ******* ** ***  ********:
7wm4_A_1     604:DVFGPPFQNLNSLDMRFNPFDCTCESISWFVNWINQTHTNISELSTHYLCNTPHHYYGFPLKLFDTSSCK: 673
SecStr          :HHHTGGGSS  EEE  S  EE STTTTHHHHHHHHT   EETTTTTS  EEESSTTTT  SSS   TT  :    
ExpBur          :ebbbebbeebeebbbbebebebeeebbbebbebbeeeebebeebeeebebeeeeeeeeeebeebebeeee:

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