Protein Model on 7r52_A_1_O_1 (TEMPLATE: 7r52 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR3_HUMAN) A 1 (A) polymer(polypeptide(L)) [733 aa] Toll-like receptor 8 :TLR8_HUMAN
2 b O 1 (A) non-polymer(I6A) 5-methoxy-6-pyridin-4-yl-1~{H}-indole 420S(F) 421K(F) 442E(S) 444G(A) (identity: 0.0 %/31.5 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7r52_A_1 identity=31.5%
queryA        34:VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS--------------KLEPELCQKLPMLKVLNLQHNELSQLSDKTF: 119
                : * **   *  **       * * *  *         *     **      *                          *  *  * *  * * *      :
7r52_A_1      20:IAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNXXXXXXXXXXXXXGLNITDGAFLNLKNLRELLLEDNQLPQIPS---: 116
SecStr          :EEE  SS  SS  TTS TTEEEEE  SS   EE TTSSTT TT  EEE  SS  -------------  EE TTSSTT TT  EEE  SS  SS  S---:    
ExpBur          :ebbbeebebeeebeebbeebbebebbebebeebeeebbeebeebebbebbebee-------------ebebeebbbeebeebeebbbbebebeebbb---:    

queryA       120:AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL-------SSTKLGTQVQLEN---------------------LQELLLSNNKIQALKSEEL: 191
                :     **** *  * *  *         **  * *  *              *    * *                     *  * ***  *     *  :
7r52_A_1     117:GLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYXXXXCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNTQIKYISEEDF: 216
SecStr          :S  TT  EEE  SS   EE HHHHTT TT  EEE  SS  ----    EE TTTTTT TT  EEE  SS  SS  SS  TT  EEE TTS   EE TTTT:    
ExpBur          :ebbebbbebbbbebebeebebebbbebeebebbebbebbe----eeebeeeeebbeebeebebbbbbbbbbeebbeebbeebbebebbbbebeebebeeb:    

queryA       192:DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--NVV: 289
                :    *  *  * ** *      * ** *              * *           *  * * **   *       *       *  ***  * *     :
7r52_A_1     217:KGLINLTL--LDLSGN-----CPRCFNAPFPCVP-----CDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMP--HLKVLDLEFNYLVGEIA: 302
SecStr          :TT TT  E--EE TTS-----S   SS SS    ----- TTS   EE TTSSTT TT  EEE  SS  S   GGGGTT T--T  EEE  SS  HHHHH:    
ExpBur          :eebeebeb--bbbbbb-----bbbeeeeebeeee-----beeeeebebeeebbeebeebeebbbbbbbbeebeeebbeebe--ebebbbbbbbebbebbe:    

queryA       290:GNDSFAWLPQLEYFFLEYNNI-----QHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK: 382
                :       ** **   *  * *     **   *     *   * * * *    *          ***     *  *   *   * *  *    *    ** :
7r52_A_1     303:SGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHL-RGYVFQEL------REDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLE: 395
SecStr          :S SGGGG TT  EEE  S   TT   SB    GGGGG TT  EEE -TT   SEE------ TGGGTTTTT SS  EEE  S   SEE GGGGTT SS  :    
ExpBur          :ebebbeebeebeebbbbbbeeeeeeeeebebbeebebbeebebbbb-bbbbbbeb------eeebbebbbebeebebbbbbebebeebebebbeebeebe:    

queryA       383:YLSLS-NSFTSLRTLTNETFVSL------------------AHS-------PL---------HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL: 447
                :   ** *    *                              **       **           * *  * *  *    *  *     * *  *   * *:
7r52_A_1     396:IIYLSENRISPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVL: 495
SecStr          :EEE  SS     ---------------------------- TTS SSS  S SS HHHHTTSEEEE  SS  SS  TTSSTT   EEEEE  SS    B :    
ExpBur          :ebbbbebbbebe----------------------------eeeeeebbeeeeebeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebeb:    
Contact         :                                                                        bb                    b b   

queryA       448:TGQEWRGLENIFEIYLSYNKYLQLTRN--SFALVPSLQRLMLRRVALKNVDSSPSP----------FQPLRNLTILDLSNNNIANINDDM-LEGLEKLEI: 534
                : * *               *** ** *   *     *  *    *      *               *   **  * ** ***    *   **     * :
7r52_A_1     496:SGTEFSAIPHV--------KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHXXXXXXXXHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVEL: 587
SecStr          : S TTSSSTT --------SEEE  SS  B  STTTTTT TT  EEE TT   --------   GGGGG SS  EEE TT       S  S   SS  EE:    
ExpBur          :ebebbeebeeb--------ebbbbbebebebeeeebbbbbeebbbbbbbebee--------ebbebbeebeebeebebbebebeebeebeebebebbeeb:    
Contact         :                           b                                                                        

queryA       535:LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF----KDLFELKIID--------------------------------------: 592
                :     * *  **        *   ***  *  * *  *    ** * *      * ** * *                                      :
7r52_A_1     588:V-FSGNRLDILW-NDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFT: 685
SecStr          :E- TTS HHHHS- SS  TTTTTTTT TT  EEE TTS  S   HHHHHTS TT SEEE  SS  S   GGGGGG TT  EEE  SS      TTHHHH :    
ExpBur          :b-bbbbbbeebb-eeebeebeebbeebeebeebbbbebebeebeeebbebbbeebeebbbbebebeebebebbeebeebebbbbeebebeeebeebeeeb:    

queryA       593:-------LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF-GPAFRNLTELDMRFNPFDCTCESIAWFVNWINE-THTNIPELSSHYLCNTPPHY: 683
                :       *  *    **        *** * *  **     *          *  *    *** ***  *  *  *  *     ** *     *  *   :
7r52_A_1     686:SSLRTLLLSHNRISHLPSGFLXXVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCD-IGDFRRWMDEHLNVKIPRLVD-VICASPGDQ: 783
SecStr          :S   EEE  SS      TT  --  S  EEE TTS      TTTS   S     EEE TT  EE SGG-GHHHHHHHHH TTSB   GGG- BEEE TTT:    
ExpBur          :ebbebbbbbebebeebbeebb--eeebebbbbbebebeebeeebbeeeeebebeebbbeebebebeee-beebbbbbeeeeebebebbbe-bebeeeeee:    

queryA       684:HG: 685
                : *:
7r52_A_1     784:RG: 785
SecStr          :TT:    
ExpBur          :ee:

Input Residue Numbers for Focused Sites

ex) 2,15,123