Protein Model on 7crf_B_1_F_1
(TEMPLATE: 
7crf
)Protein Model on 7crf_B_1_F_1
(TEMPLATE: 7crf
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(TLR3_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [751 aa] | Toll-like receptor 8 :TLR8_HUMAN | |
| 2 | b | F 1 (F) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 175E(K) 177L(F) 179S 199L 203E(D) 205S 252N(Y) 254S(N) 387S 388N 389S(F) 390F(Y) (identity: 41.7 %/30.5 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:7crf_B_1 identity=30.5% |
queryA 34:VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS--------------KLEPELCQKLPMLKVLNLQHNELSQLSDKTF: 119
: * ** * ** * * * * * ** * * * * * * * * :
7crf_B_1 24:IAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNXXXXXXXXXXXXNGLNITDGAFLNLKNLRELLLEDNQLPQIPS---: 120
SecStr :EEE SS SS S TTEEEEE SS EE TTTTSS TT EEE S ------------ EE TTSSTT TT EEE SS SS S---:
ExpBur :bbebeebebeebbeebeeebbebebbebebeebeeebbeebeebeebbbbebbe------------eebebeeebbeebeebeebbbbebebeebbe---:
queryA 120:AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN-----------------------------LQELLLSNNKIQALKSEE: 190
: **** * * * * ** * * * * * * * *** * * :
7crf_B_1 121:GLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFN-KVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNTQIKYISEED: 219
SecStr :S TT SEEE SS EE HHHHTT TT SEEE SSSSS -SS SS EE TTTTTT TT EEE SS SS S TT SEEE TTS EE TTT:
ExpBur :ebbebbeebbbbebebbebeeebbeebeebebbebbbbbbee-eebeebeeeebbbeebeebebbbbbbbbbeebbeebbebbeebebbbbebeebeeee:
Contact : b b b
queryA 191:LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--NV: 288
: * * * ** * * ** * * * * * * ** * * * *** * * :
7crf_B_1 220:FKGLINLTL--LDLSGN-----CPRCFNAPFPCVP-----CDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMP--HLKVLDLEFNYLVGEI: 305
SecStr :TSS TT E--EE TTS-----S SS SS ----- GGG EE TTTTTT TT EEE SS S GGGGTT T--T EEE SS HHHH:
ExpBur :beebeebbb--bbbbbb-----bbbeeeeebeeee-----beeeeebebeeebbeebeebeebbbbbbbbeebebbbbeebe--ebebbbbbbbebbebb:
Contact : b b b b b
queryA 289:VGNDSFAWLPQLEYFFLEYNNI-----QHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMFTGLINL: 381
: ** ** * * * ** * * * * * * * *** * * * * * * * **:
7crf_B_1 306:ASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHL-RGYVFQEL------REDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNL: 398
SecStr :HS SGGGG TT EEE S TT SB GGGGG TT EEE -TT SEE------ GGGGGGGSS TT EEE S EE GGGGSS SS :
ExpBur :eebebbeebeebeebbbbbbeeeeeeeeebebbeebbebeebebbbb-bbbbbeeb------eeebbebbbebeebbbbbbbbbebeebebebbeebeeb:
queryA 382:KYLSL---------------------------------------SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE: 442
: * ** * * * * * * * * * * * * :
7crf_B_1 399:EIIYLSENRISPLVKDXXXXXXXXXXXXXXXXXXXXXXXEFDPHSNFYHFTRPLIKPQCAAYGKA----LDLSLNSIFFIGPNQFENLPDIACLNLSANS: 494
SecStr : EEE SS ----------------------- TTS SSS S SS HHHHTTS E----EE TTS SS TTTTSS SEEE SS :
ExpBur :ebbbbbebebebbeee-----------------------eeebeeebbbeeeebbeeebeeeeeb----bbbbebebeebbebbbeebbebbbbbbbebe:
Contact : b bbbbb
queryA 443:IGQELTGQEWRGLENIFEIYLSYNKYLQLTRN--SFALVPSLQRLMLRRV----------ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM-LEGL: 529
: * * * * *** ** * * * * * * * ** * ** *** * ** :
7crf_B_1 495:NAQVLSGTEFSAIPHV--------KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESK: 586
SecStr : B S SSTTSTT -------- EEE SS B TTTTTT TT EEE S HHHHT TTS GGGGG SS EEE TT SS S EES:
ExpBur :bebebebebbeebeeb--------ebbbbbebebbbeeeebbebbeebbbbbbbebeeebeeeeeebbbbbbeebeebeebebbebbbeebeeeeebebe:
queryA 530:EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF----KDLFELKIID---------------------------------: 592
: * * * ** * *** * * * * ** * * * ** * * :
7crf_B_1 587:SLVELV-FSGNRLDILW-NDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDS: 684
SecStr :S EEE- TTS HHHHT-T TT TTTTTTTEETT EEE SS S HHHHTTS TT SEEE SS S GGGGGG TT EEE SS S :
ExpBur :bbeebb-bbbbbbbebb-eeeeeebbebbeebeebeebbbbebebeebbeebbebbbebbeebbbbebebeebebebbeebeebeebbbeebebeebbee:
queryA 593:------------LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE-KKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINE-THTNIPELSSHYLCN: 678
: * * ** *** * * ** * * *** *** * * * * ** * * :
7crf_B_1 685:LSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINXXXXXXXXXXKLSMLELHGNPFECTCD-IGDFRRWMDEHLNVKIPRLVD-VICA: 782
SecStr :GGGT S EEE SS TTTSSS TT EEE TTS S ---------- EEE TT EE SST-THHHHHHHHH SSB S GGG- BEE:
ExpBur :beebbebbebbbbbebebeebbeebeeebebbebbbbbebebeebe----------ebeebbbbebebbbbee-bbebbebbeeeeebbbeebbe-bebb:
queryA 679:TPPHYHGFPVRLFDTSSC: 696
: * * *:
7crf_B_1 783:SPGDQRGKSIVSLELTTC: 800
SecStr :ESTTTTTSBTTS SSS :
ExpBur :bbeebeeebbeebeeeee:
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[assembly_id:1]
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