Protein Model on 7crf_A_1_I_1 (TEMPLATE: 7crf )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR3_HUMAN) A 1 (A) polymer(polypeptide(L)) [744 aa] Toll-like receptor 8 :TLR8_HUMAN
2 b I 1 (A) non-polymer(GD0) 1-[2-(ethoxymethyl)-4-iodanyl-5-phenyl-imidazol-1-yl]-2-methyl-propan-2-ol 420S(F) 421K(F) 444G(A) 445Q 446E(V) 475S(D) (identity: 16.7 %/30.9 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7crf_A_1 identity=30.9%
queryA        34:VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS--------------KLEPELCQKLPMLKVLNLQHNELSQLSDKTF: 119
                : * **   *  **       * * *  *         *     **      *                          *  *  * *  * * *      :
7crf_A_1      24:IAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNXXXXXXXXXXXXNGLNITDGAFLNLKNLRELLLEDNQLPQIPS---: 120
SecStr          :EEE  SS  SS  S   TT SEEE  SS   EE TTTTTT TT SEEE  S   ------------   EE TTSSTT TT  EEE  SS  SS  S---:    
ExpBur          :bbebeebebeebbeebeeebbebebbebebeebeeebbeebeebeebbbbebbe------------eebebeeebbeebeebeebbbbebebeebbb---:    

queryA       120:AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN-----------------------------LQELLLSNNKIQALKSEE: 190
                :     **** *  * *  *         **  * *  *     *       *                              *  * ***  *     * :
7crf_A_1     121:GLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFN-KVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNTQIKYISEED: 219
SecStr          :S  TT SEEE  SS   EE HHHHTT TT SEEE  SSSSS -SS SS EE TTTTTT TT  EEE  SS  SS  S   TT SEEE TTS   EE TTT:    
ExpBur          :ebbebbeebbbbebebbebbeebbbebeebebbbbbbbbbee-eebeebeeeebbbeebeebebbbbbbbbbeebbeebbebbeebebbbbebeebeeee:    

queryA       191:LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--NV: 288
                :     *  *  * ** *      * ** *              * *           *  * * **   *       *       *  ***  * *    :
7crf_A_1     220:FKGLINLTL--LDLSGN-----CPRCFNAPFPCVP-----CDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMP--HLKVLDLEFNYLVGEI: 305
SecStr          :TSS TT  E--EE TTS-----S   SS SS    ----- GGG   EE TTTTTT TT  EEE  SS  S   GGGGTT T--T  EEE  SS  HHHH:    
ExpBur          :beebeebbb--bbbbbb-----bbbeeeeebeeee-----beeeeebebeeebbeebeebeebbbbbbbbeebebebbeebe--ebebbbbbbbebbebb:    

queryA       289:VGNDSFAWLPQLEYFFLEYNNI-----QHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMFTGLINL: 381
                :        ** **   *  * *     **   *     *   * * * *    *          ***     *  *   *   * *  *    *    **:
7crf_A_1     306:ASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHL-RGYVFQEL------REDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNL: 398
SecStr          :HS SGGGG TT  EEE  S   TT   SB    GGGGG TT  EEE -TT   SEE------ GGGGGGGSS TT  EEE  S    EE GGGGSS SS :    
ExpBur          :bebebbeebeebeebbbbbbeeeeeeeeebebbeebeebeebebbbb-bbbbbebb------eeebbebbbebeebbbbbbbbbebeebebebbeebeeb:    

queryA       382:KYLSL---------------------------------------SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE: 442
                :    *                                       **     * *               * *  * *  *    *  *     * *  * :
7crf_A_1     399:EIIYLSENRISPLVKDXXXXXXXXXXXXXXXXXXXXXXXEFDPHSNFYHFTRPLIKPQCAAYGKA----LDLSLNSIFFIGPNQFENLPDIACLNLSANS: 494
SecStr          : EEE  SS        -----------------------   TTS SSS  S SS HHHHTTS E----EE TTS  SS  TTTT S    SEEE  SS :    
ExpBur          :ebbbbbebebebeeee-----------------------eeebeeebbbeeeebbeeebeeeeeb----bbbbebebeebbeebbeebbebbbbbbbebe:    
Contact         :                                                                             bb                     

queryA       443:IGQELTGQEWRGLENIFEIYLSYNKYLQLTRN--SFALVPSLQRLMLRRV----------ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM-LEGL: 529
                :  * * * *               *** ** *   *     *  *    *              *       *   **  * ** ***    *   **  :
7crf_A_1     495:NAQVLSGTEFSAIPHV--------KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESK: 586
SecStr          :   B  S SSTTSTT -------- EEE  SS  B   TTTTTT TT  EEE  S  GGGS TTS    GGGGG SS  EEE TT      SS  S EES:    
ExpBur          :bebebebebbeebeeb--------ebbbbbebebbbeeeebbebbeebebbbbbebeeebeeeeeebbbbbbeebeebeebebbebbbeebeeeeebebe:    
Contact         : bbb                              b                       b                                         

queryA       530:EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF----KDLFELKIID---------------------------------: 592
                :   *      * *  **        *   ***  *  * *  *    ** * *      * ** * *                                 :
7crf_A_1     587:SLVELV-FSGNRLDILW-NDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDS: 684
SecStr          :S  EEE- TTS HHHHT-T TT TTTTTTTEETT  EEE  SS  S   HHHHTTS TT SEEE  SS  S   GGGGGG TT  EEE  SS      S :    
ExpBur          :bbeebb-bbbbbbbebb-eeeeeebbebbebbeebeebbbbebebeebeeebbebbbebbbebbbbebebeebebebbeebeebebbbbebbebeebbee:    

queryA       593:------------LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE-KKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINE-THTNIPELSSHYLCN: 678
                :            *  *    **        *** * *  **                *  *    *** ***  *  *  *  *     ** *     * :
7crf_A_1     685:LSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINXXXXXXXXXXKLSMLELHGNPFECTCD-IGDFRRWMDEHLNVKIPRLVD-VICA: 782
SecStr          :GGGT S   EEE  SS      SSSSS  TT  EEE TTS  S   ----------   EEE TT  EE SST-THHHHHHHHH  SSB   GGG- BEE:    
ExpBur          :beebbebbebbbbbebebeebbeebbeebebbebbbbbebebeebe----------ebeebbbbebebebeee-beebbebbeeeeebebbebbe-bebe:    

queryA       679:TPPHYHG: 685
                : *    *:
7crf_A_1     783:SPGDQRG: 789
SecStr          :ESTTTTT:    
ExpBur          :eeeebee:

Input Residue Numbers for Focused Sites

ex) 2,15,123