[pdbjlvh2]Protein Model on 7c76_A_1_F

Protein Model on 7c76_A_1_F_1 (TEMPLATE: 7c76 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR3_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [691 aa]	Toll-like receptor 3 :TLR3_HUMAN
2	b		F 1 (F)	branched(oligosaccharide)	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	363E 387S 413N 435V 437D 462Y (identity: 100.0 %/99.1 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7c76_A_1 identity=99.1%

queryA        30:VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH: 129
                :****************************************************************************************************:
7c76_A_1      30:VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH: 129
SecStr          :  SSEEE TTS  SS  S S TT  EEE  SS      SGGGSS  S  EEE  SS  SS  GGGGGG TT  EEE TT    S  GGGGSS     EEE:    
ExpBur          :eeeeebebbeeeeeebbeebeeebbebebbebebeebebeebeebeebebbbbbebebeebeeebbeebeebeebbbeebebeebeeebbbebeebbebe:    

queryA       130:LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN: 229
                :****************************************************************************************************:
7c76_A_1     130:LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN: 229
SecStr          :  S       S SS S TT  EEE TTS  SS    SSS  TT  EEE  SS   EE HHHHGGGTT EESEEE  S    EE TTSGGGSSEE EEE  :    
ExpBur          :bbbbebeebeebbbeebeebeebbbbebbbeebebbeeebbeebebbbbbebebebbeeebbebbeebbbeebbbbebebeebbeebbebbeebebbbbb:    

queryA       230:NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL: 329
                :****************************************************************************************************:
7c76_A_1     230:NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL: 329
SecStr          :S    HHHHHHHHHHSTT    EEE TT    EE TTTT GGGGS   EEE  SS   EE TTTTTT SS  EEE  S  BSEE TTTT S SS  EEE :    
ExpBur          :ebebbeebbeebbebbbebebeebbbbebebeebeeebbebbeebebbbbbbbebebeebbeebbeebeebeebbbbebebeebeeebbebbeebeebbb:    

queryA       330:KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW: 429
                :*******      ***************************************************************************************:
7c76_A_1     330:KRSFTKQXXXXXXLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW: 429
SecStr          :TT B   ------  EE TTTTTT TT   EE  S  B    TTSSTT SS  EEE TT BS   EE TTSSGGGTT    EEE  SS   EE TTTTTT:    
ExpBur          :eebbbee------ebebeeebbebbeebeebbbeebbbeebeeebbeebeebeebbbbebbeebeebeeebbebbeebebeebebbebebeebeeebbee:    
Contact         :                                 b                       b                         b                

queryA       430:LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL: 529
                :****************************************************************************************************:
7c76_A_1     430:LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL: 529
SecStr          : SS  EEE  SS  EEE  S TTTT SS  EEE  S SEEE  TTSSSS TT  EEE  SS  BS   SS TTSS TT  EEE  SS      STTS S :    
ExpBur          :beebeebbbbebebbbebebebbebbeebebbebbebeebebbeebbeebeebeebbbeebebeebebeebbbeebeebbbbbbbbbebeebeeebbeeb:    
Contact         :     b b                        b                                                                   

queryA       530:EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV: 629
                :****************************************************************************************************:
7c76_A_1     530:EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV: 629
SecStr          :TT  EEE  SS  TTTS SSSTT     SSS  S  EEE  SS      SSSSSS SS  B    SS      SSSSTT TT  EEE TT       HHH:    
ExpBur          :eebeebbbbebebbebbeeebeeeebebbeebeebeebbbeebebeebbeebbebbeebeebbbbebebeebeeebbeebeebeebbbbebebeebeeeb:    

queryA       630:FGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCKDSAPFELFFMINTSILLIFIFIVLLIHFE: 726
                :*************************************************************************************************:
7c76_A_1     630:FGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCKDSAPFELFFMINTSILLIFIFIVLLIHFE: 726
SecStr          :HTGGGSS  EEE  S  EE  HHHHHHHHHHHHS S B SS TTT  EEESGGGTT  GGG   SSSTTTS HHHHHHHHHHHHHHHHHHHHHHHH :    
ExpBur          :beebbeebeebbbbebebebebebbbebbebeeeeebebeebeeebebeeeeeeeeeebeebeeeebeeeeeeeeeeeeeeeeeeeeeeeeeeeeee:

Protein Model on 7c76_A_1_F_1 (TEMPLATE: 7c76 )

Input Residue Numbers for Focused Sites