Protein Model on 7b1c_A_1_E_1 (TEMPLATE: 7b1c )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR3_HUMAN) A 1 (C) polymer(polypeptide(L)) [750 aa] Toll-like receptor :A0A6I8TEX2_AEDAE
2 b E 1 (B) polymer(polypeptide(L)) [751 aa] Toll-like receptor :A0A6I8TEX2_AEDAE 283Y 307Y 330K(R) 364D(L) 388N 416K(H) 473R(H) (identity: 42.9 %/31.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7b1c_A_1 identity=31.4%
queryA       274:TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN: 373
                : *** * * ** **      *  *  **   * ** *  *   *  **   * ***                 *   *  ** *  *    *        :
7b1c_A_1     166:SNLTYLGLVYNGLNEIQPGLFDGLESLEALSLSYNDIKSLSAGSFNGLSSLRMLNLR---------VNKIESFDANTFASLKELSRLEITLNPFVSLPRG: 256
SecStr          :T SEE  EES B SS  SHHHHHSS  SEEEEES       GGGG S S   EEEES---------S       TTTTTS TT  EEEEES       TT:    
ExpBur          :eebbbebeeebebeeeeebbbeebebbeebbbbebebeebeeebbeebeebbebebe---------ebebeebebebbbebeebeebbbbebebeebeee:    
Contact         :         b                       b                      b                                 b         

queryA       374:MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG---LNEIGQELTGQEWRGLENIFEIYLSYNKYLQ: 470
                : *     ** * * *    * **  *    *    *   **  *          *       * **   **    **                     * :
7b1c_A_1     257:LFSENKKLKTLILTNN-RKLVTLPEELLANLKE--LTVVNLSHNGVGNLPESLLSGSSGIIELNLGYNRLNSLPEELLSDQPQL------------QVLN: 341
SecStr          :TTTS S   EEEEES -SS     TTTTTT S --  EEE TT   S   TTSSTT TT  EEE TT   SS      TTSTT ------------   B:    
ExpBur          :bbeebeebebbbbbeb-bebeebbebbbbebee--beebbbbebebeebebebbeebeebeebbbbebebeebebbebbebeeb------------eebb:    
Contact         :              b                           b                       b                                 

queryA       471:LTRNSFALVPS--------LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA---------RLWKHANPGG: 553
                :*  *     *         ** * *    *     *   *  * **  * * **    *      *  ***    * * **          *    *   :
7b1c_A_1     342:LDHNQLESIPDYFLERNVELQTLYLSHNRLRSL--SEKAFTKLKNLKELHLENNQLQTIPQFLFSGTPKLEEIYMQNNQLALHANSFINEELSIADNDNT: 439
SecStr          :  S   S   TTTTSS S     B  S   S  -- TTGGGS TT    B TT       S  TTT TT  EEE  SS     TTTSS TT  GGGS   :    
ExpBur          :bbebebeebbeebbbebeebebbebbebbbbeb--beebbeebeebebbbbbebebeebeebbbebbeebebbbbbebebeeeeeebbeeeeeeeebbeb:    
Contact         :  b                                                                                                 

queryA       554:PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV---EKKVFGPAFRNLTELDMRFNPFDCT: 650
                :*   *  *  **  *   *    *         *    **  * *  *       *     ***  * *  *         *  *     *   **  * :
7b1c_A_1     440:PFQVLQKLRILHLRN---NSISTIFQDWYINNLEMQSLDLSFNKLPGLSYTQLQFQSNI-TLNLSNNEISQVLLIDDLDLQPYQR--INVDLNHNPLNCN: 533
SecStr          :HHHH  S  EEE TT---    S  SHHHHT TT  EEE  S    EEEGGGG  SS  -EEE TT    EEE  S   SSS   --EEEE  SS    S:    
ExpBur          :bbbebeebebbbbee---bebeebbbbbbeebbebebbebbebebeebeeebbebeeeb-ebebbebebeebebeebeeeeeebb--bebbbbebbbebe:    

queryA       651:CESIAWFVNWINETHTNIPELSSHYL-CNTPPH: 682
                :*     *   *              * *  ** :
7b1c_A_1     534:CNALK-FIQLIQSKAEHGLQFNVDQLRCSEPPN: 565
SecStr          :HHHHH-HHHHHTT TT SEEEE SS EE SSGG:    
ExpBur          :ebbbe-bbbebeebeebbbebebeebebeebee:

Input Residue Numbers for Focused Sites

ex) 2,15,123