Protein Model on 6v9u_A_1_R_1 (TEMPLATE: 6v9u )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR3_HUMAN) A 1 (A) polymer(polypeptide(L)) [738 aa] Toll-like receptor 8 :TLR8_HUMAN
2 b R 1 (A) non-polymer(QSM) 2-(3,4-dimethoxyphenyl)-5-(piperidin-4-yl)-3-(propan-2-yl)-1H-indole 217F 309N(Y) 310I 334T(V) 366D(F) (identity: 40.0 %/31.2 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6v9u_A_1 identity=31.2%
queryA        34:VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS--------------KLEPELCQKLPMLKVLNLQHNELSQLSDKTF: 119
                : * **   *  **       * * *  *         *     **      *                          *  *  * *  * * *      :
6v9u_A_1      24:IAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNXXXXXXXXXXXXXGLNITDGAFLNLKNLRELLLEDNQLPQIPS---: 120
SecStr          :EEE  SS  SS  S S TT  EEE TT    EE TTTTTT TT  EEE TT   -------------  EE TTSSTT SS  EEE  SS  SS  S---:    
ExpBur          :ebbbeebebeebbeebeeebbebebbebebeebeeebbeebeebebbbbbebee-------------ebebeeebbeebeebeebbbbebebeebbe---:    

queryA       120:AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL-------SSTKLGTQVQLEN---------------------LQELLLSNNKIQALKSEEL: 191
                :     **** *  * *  *         **  * *  *              *    * *                     *  * ***  *     *  :
6v9u_A_1     121:GLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNXXCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNTQIKYISEEDF: 220
SecStr          :S  TT SEEE  SS   EE TTTTTT  S SEEE  SSSS  --    EE TTTTTS TT  EEE  SS  SS  SS  TT  EEE TT    EE TTTT:    
ExpBur          :ebbeebebbbbbebebeebeeebbbebeebeebebbbbbbee--eeebeeeebbbeebeebebbbbbbbbbeebbeebbeebbebebbbbebeebebeeb:    

queryA       192:DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--NVV: 289
                :    *  *  * ** *      * ** *              * *           *  * * **   *       *       *  ***  * *     :
6v9u_A_1     221:KGLINLTL--LDLSGN-----CPRCFNAPFPCVP-----CDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMP--HLKVLDLEFNYLVGEIA: 306
SecStr          :SS TT SE--EE TTS-----S    S SS    ----- TTS   EE TTTTTT TT  EEE  SS  S   GGGGTT S--S  EEE  SS  HHHHH:    
ExpBur          :eebeebeb--bbbbbb-----bbbeeeeebeeee-----beeeeebebebebbeebeebeebbbbbbbbeebebebbeebe--ebbbbbbbbbebbebbe:    
Contact         :                         b                                                                          

queryA       290:GNDSFAWLPQLEYFFLEYNNI-----QHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK: 382
                :       ** **   *  * *     **   *     *   * * * *    *          ***     *  *   *   * *  *    *    ** :
6v9u_A_1     307:SGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHL-RGYVFQEL------REDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLE: 399
SecStr          :S GGGGG SS  EEE  S   TT   SS    GGGGG TT  EEE -TT   SEE------ TTTTGGGTT SS  EEE  SS  SEE THHHHSSSS  :    
ExpBur          :ebebbeebeebeebbbbbbeeeeeeeeebebbeebeebeebebbbb-bbbbbbbb------eeebbebbbebeebebbbbbebebeebebebbeebeebb:    
Contact         :                   bbbbb                          b                                b                

queryA       383:YLSL---------------------------------------SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI: 443
                :   *                                       **     * *               * *  * *  *    *  *     * *  *  :
6v9u_A_1     400:IIYLSENRISPLVKXXXXXXXXXXXXXXXXXXXXXXXXXFDPHSNFYHFTRPLIKPQCAAYGKA----LDLSLNSIFFIGPNQFENLPDIACLNLSANSN: 495
SecStr          :EEE  SS       -------------------------  SSS SSS  S SS HHHHTSSEE----EE  SSS SS  TTTTTT   EEEEE TTS  :    
ExpBur          :ebbbbebebebeee-------------------------eeeeeeebbeeeeebeeebeeeeeb----bbbbebebeebbeebbeebbebbbbbbbebeb:    
Contact         :     b                                                                                              

queryA       444:GQELTGQEWRGLENIFEIYLSYNKYLQLTRN--SFALVPSLQRLMLRRV----------ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM-LEGLE: 530
                : * * * *               *** ** *   *     *  *    *              *       *   **  * ** ***    *   **   :
6v9u_A_1     496:AQVLSGTEFSAIPHV--------KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKS: 587
SecStr          :  B  S TTSSSTT --------SEEE  SS  B  STTTTTT TT  EEE TT THHHH SSS     GGGG SS  EEE TT      SS  S EESS:    
ExpBur          :ebebeeebbeebeeb--------ebbbbbebebbbeeeebbbbbeebebbbbbebeebbbeeeeebbbebbeebeebbebebbebebeebeebeebebeb:    

queryA       531:KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF----KDLFELKIID----------------------------------: 592
                :  *      * *  **        *   ***  *  * *  *    ** * *      * ** * *                                  :
6v9u_A_1     588:LVELV-FSGNRLDILW-NDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSL: 685
SecStr          :  EEE- TTS HHHHT-T TT  STTTTTEETT  EEE TTS  S   HHHHHTS TT SEEE  SS      GGGGGG SS  EEE TT       S G:    
ExpBur          :beebb-bbbbbbeebb-ebeeeebeebbeebeebeebbbbebebeebeeebbeebbebbbebbbbebebbebebebbeebeebebbbbeebebeebbeeb:    

queryA       593:-----------LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRN-LTELDMRFNPFDCTCESIAWFVNWINE-THTNIPELSSHYLCNT: 679
                :           *  *    **        *** * *  **     *          *  *    *** ***  *  *  *  *     ** *     *  :
6v9u_A_1     686:SDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALXXXXXTKLSMLELHGNPFECTCD-IGDFRRWMDEHLNVKIPRLVD-VICAS: 783
SecStr          :GGT SS  EEE TTS      TTSTTT SS  EEE TTS      TTT -----    EEE TT  EE SST-THHHHHHHHH  SSB S GGG- BEEE:    
ExpBur          :eeebebbeebbbbebebeebbeebbebbeebebbbbbebebeebeeebb-----eebeebbbbebebebeee-beebeebbeeeeebebeebbb-bebee:    

queryA       680:PPHYHG: 685
                :*    *:
6v9u_A_1     784:PGDQRG: 789
SecStr          :STTTTT:    
ExpBur          :eeeeee:

Input Residue Numbers for Focused Sites

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