Protein Model on 6ty5_B_1_V_1 (TEMPLATE: 6ty5 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR3_HUMAN) B 1 (B) polymer(polypeptide(L)) [743 aa] Toll-like receptor 8 :TLR8_HUMAN
2 b V 1 (B) non-polymer(O0W) 5-methyl-7-(7-methyl-2-piperidin-4-yl-indazol-5-yl)furo[3,2-c]pyridin-4-one 368P(F) 369G(F) 391T(S) 393L(A) 394R(Q) 395T(V) 418K(R) 444G(Y) (identity: 0.0 %/30.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6ty5_B_1 identity=30.4%
queryA       360:LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG-----QEWRG: 454
                :*    * *  *  * *  *     * **        *    *    *     * ** *        *   *  ******  *       *          :
6ty5_B_1     460:LDLSLNSIFFIGPNQFENLPDIACLNLSAN-SNAQVLSGTEFSAIPH--VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQN: 556
SecStr          :EE  SSS SS  TTSSTT   EEEEE  SS-    B  S TTSSSTT-- SEEE  SS  B  STTTTTT TT  EEE TT   SS  TTTSS  GGGGG:    
ExpBur          :bbbbebebeebbeebbeebbebbbbbbbeb-ebbbebebebbeebee--bebbbbbebebbbbeeebbbbbeebbbbbbbebebeeeeeeebbbbebbee:    
Contact         :        bb                     b bbb                      b                         b               

queryA       455:LENIFEIYLSYNKYLQLTRNSFALVPSLQRLML---RRVALKNVDSSP--SPFQPLRNLTILDLSNNNIANI-NDDMLEGLEKLEILDLQHNNLARL-WK: 547
                :  *     ** *    **        **  *     *   * * *     * *  * *** **** *    * *   *     *  *    * *    * :
6ty5_B_1     557:FTNLKVLNLSHNNIYTLTXKYNLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWT: 656
SecStr          : SS  EEE TT       -  S B SS  EEE TTS HHHHT SS  TTTTTTTB TT  EEE TTS  S   HHHHHTS TT SEEE  SS  S   GG:    
ExpBur          :beebeebebbebebeebb-eeebebebbeebbbbebbbeebbeeeeeebbebbebbeebeebbbbebebeebeeebbebbbeebbebbbbebebeebebe:    

queryA       548:HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF-GPAFRNLTELDMRFNP: 646
                :          *     *  * *  *               *    *  *    **        *** * *  **     *          *  *    **:
6ty5_B_1     657:---------LLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNP: 747
SecStr          :---------GGGG TT  EEE  SS      S GGGT S   EEE  SS      TTSSTT SS  EEE TTS      HHHH  SS     EEE TT  :    
ExpBur          :---------bbeebebbebbbbeebebbebbeebeebbebbeebbbbebebeebbeebbbebeebebbbbbebebeebeeebbeeeeebebeebbbbebe:    

queryA       647:FDCTCESIAWFVNWINE-THTNIPELSSHYLCNTPPHYHG: 685
                :* ***  *  *  *  *     ** *     *  *    *:
6ty5_B_1     748:FECTCD-IGDFRRWMDEHLNVKIPRLVD-VICASPGDQRG: 785
SecStr          :EE SGG-GHHHHHHHHH TTSB   GGG- BEEE TTTTT:    
ExpBur          :bebeee-beebbebbeeeeebebeebbe-bebeeeeeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123