Protein Model on 6ty5_A_1_C_1
(TEMPLATE: 
6ty5
)Protein Model on 6ty5_A_1_C_1
(TEMPLATE: 6ty5
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(TLR3_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [738 aa] | Toll-like receptor 8 :TLR8_HUMAN | |
| 2 | b | C 1 (C) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 175E(K) 177L(F) 179S 199L 203E(D) 205S 252N(Y) 254S(N) 406H 407S (identity: 50.0 %/32.0 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6ty5_A_1 identity=32.0% |
queryA 34:VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS--------------KLEPELCQKLPMLKVLNLQHNELSQLSDKTF: 119
: * ** * ** * * * * * ** * * * * * * * * :
6ty5_A_1 20:IAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNXXXXXXXXXXXXXGLNITDGAFLNLKNLRELLLEDNQLPQIPS---: 116
SecStr :EEE SS SS S S TTEEEEE TTS EE TTTTTT TT EEE SS ------------- EE TTSSTT TT EEE SS SS S---:
ExpBur :bbebeebebeebbeebbeebbebebbebebeebeeebbeebeebeebbbbebee-------------ebebeeebbeebeebebbbbbebebeebbe---:
queryA 120:AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL-------SSTKLGTQVQLEN---------------------LQELLLSNNKIQALKSEEL: 191
: **** * * * * ** * * * * * * * * *** * * :
6ty5_A_1 117:GLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFXXXCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNTQIKYISEEDF: 216
SecStr :S TT EEE TTS EE TTTTTT TT EEE SSS --- S EE TTSSTT TT EEE SS SS SS TT EEE TTS EE TTTT:
ExpBur :ebbebbeebbbbebebeebeeebbbebeebbebbbbebbbe---eeebeeeebbbeebeebebbbbbbbbbeebbeebbebbeebebbbbebeebbeeeb:
Contact : b b b
queryA 192:DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--NVV: 289
: * * * ** * * ** * * * * * * ** * * * *** * * :
6ty5_A_1 217:KGLINLTL--LDLSGN-----CPRCFNAPFPCVP-----CDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMP--HLKVLDLEFNYLVGEIA: 302
SecStr :SS TT E--EE TTS-----S SS SS ----- TTS EE TTTTSS TT EEE SS S GGGGTT T--T EEE SS HHHHH:
ExpBur :eebeebbb--bbbbbb-----bbbeeeeebeeee-----beeeeebebeeebbeebeebeebbbbbbbbeebebbbbeebe--ebebbbbbbbebbebbe:
Contact : b b b b b
queryA 290:GNDSFAWLPQLEYFFLEYNNI-----QHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK: 382
: ** ** * * * ** * * * * * * * *** * * * * * * * ** :
6ty5_A_1 303:SGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHL-RGYVFQEL------REDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLE: 395
SecStr :S GGGGG TT EEE S TT SB GGGGG TT EEE -TT SEE------ TTTTGGGTT SS EEE S SEE GGGGTT SS :
ExpBur :ebebbeebeebeebbbbbbeeeeeeeeebebbeebeebeebebbbb-bbbbbbeb------eeebbebbbebeebebbbbbebebeebebebbeebeebe:
queryA 383:YLSLS-NSFTSLRTLTNETFVSL------------------AHS-------PL---------HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL: 447
: ** * * ** ** * * * * * * * * * * * *:
6ty5_A_1 396:IIYLSENRISPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVL: 495
SecStr :EEE SS ---------------------------- TTS SSS S SS HHHHTTSEEEE SSS SS TTSSTT EEEEE SS B :
ExpBur :ebbbbebebeee----------------------------eeeeeebbeeeebbeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebbbeb:
Contact : b bbbbb
queryA 448:TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN----IANIND--DMLEGLEKLEILDLQHNN: 541
: * * *** ** * * * * * * **** * ** * * * ***:
6ty5_A_1 496:SGTEFSAIPHV--------KYLDLTNN--------------RLDFDNA----SALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNN: 569
SecStr : S TTSSSTT --------SEEE SS-------------- B ST----TTTTT TT EEE TT SS TTTSS GGGGG SS EEE TT :
ExpBur :ebebbeebeeb--------ebbbbbeb--------------ebbbbee----ebbbbbeebbbbbbbebebeeeeeeebbbbebbeebeebeebbbbebe:
queryA 542:LARLWKHANPGGP-----------------------IYFLKGLSHLHILNLESNGFDEIPVEVF----KDLFELKIID----------------------: 592
: * * * *** * * * * ** * * * ** * * :
6ty5_A_1 570:IYTLTXKYNLESKSLVELVFSGNRLDILWXXXXNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDL: 669
SecStr : - S B SS EEE TTS HHHH ---- TTTTTTTB TT EEE TTS S HHHHHTS TT SEEE SS S GGGGGG TT EEE :
ExpBur :beebb-eeebebebbeebbbbebbbeebe----eebbebbebbeebeebbbbebebeebeeebbeebbebbbebbbbebebeebebebbeebeebebbbb:
queryA 593:-----------------------LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF-GPAFRNLTELDMRFNPFDCTCESIAWFVNWINE-THTN: 667
: * * ** *** * * ** * * * *** *** * * * * :
6ty5_A_1 670:RGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLSXVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCD-IGDFRRWMDEHLNVK: 768
SecStr : SS S GGGT S EEE SS TTS - S EEE TTS HHHH SS EEE TT EE SGG-GHHHHHHHHH TTSB:
ExpBur :eebebeebbeebeeebebbeebbbbebebeebbeebbe-bebbebbbbbebebeebeeebbebeeebebeebbbbebebebeee-beebbebbeeeeebe:
queryA 668:IPELSSHYLCNTPPHYHG: 685
:** * * * *:
6ty5_A_1 769:IPRLVD-VICASPGDQRG: 785
SecStr : GGG- BEEE TTTTT:
ExpBur :beebbe-bebeeeeeeee:
|
[assembly_id:1]
[help]