Protein Model on 6gff_J_1_U_1
(TEMPLATE: 
6gff
)Protein Model on 6gff_J_1_U_1
(TEMPLATE: 6gff
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(TLR3_HUMAN) | J 1 (J) | polymer(polypeptide(L)) [493 aa] | Leucine-rich repeat-containing protein 32 :LRC32_HUMAN | |
| 2 | b | U 1 (U) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 359H(N) 361N(D) 363E(S) 364D(Y) 383Y(F) 385S(N) 411I(L) (identity: 0.0 %/31.8 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6gff_J_1 identity=31.8% |
queryA 28:CTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE: 127
:* * * * *** ** * * **** * * * ** * ** * * * * * * * ** * :
6gff_J_1 7:CKMVDKKVSCQVLGLLQVPSVLPPDTETLDLSGNQLRSILASPLGFYTALRHLDLSTNEISFLQPGAFQALTHLEHLSLAHNRLA---------------: 91
SecStr : EEETTEEE TTS SS S S TT EEE TTS EE HHHHTT TT SEEE SS EE TTTGGG TT EEE SS GG---------------:
ExpBur :beeeeeebebeeeebeebbeebeeebeebebbebebeebeeeebeebeebbebbbbebebeebeeebbeebeebeebbbbebebb---------------:
queryA 128:LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV-QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL: 226
: * * **** * * * * * * * * * * * * ** * * ** *:
6gff_J_1 92:---MATALSAGGLGPLPR---VTSLDLSGNSLYSGLLERLLGEAPSLHTLSLAENSLTRLTRHTFRDMP--ALEQLDLHSNVLMDIEDGAFEGLPRLTHL: 183
SecStr :---GHHHHSTT S SS--- EEE TTS BTTHHHHH TT EEE SSB EE TTSS S T--T EEE SS EE TTTTTT TT EE:
ExpBur :---ebbeebeebbbebee---bebbebbebebeeeebeebbeebeebeebbbbebebbebeeebbeebe--ebeebebebbebeeeeebbbeebeebeeb:
queryA 227:FLNNVQLGP----SLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF: 322
: * * ** * * ** * * ** *** * * * ** * * * ** * :
6gff_J_1 184:NLSRNSLTCISDFSLQQLRVLDLSCNSIEAF-----QTASQPQAEF------QLTWLDLRENKL--LHFPDLAALPRLIYLNLS-NNLIRLPXXXXXXXX: 269
SecStr :E S EE SS EEE SS EE----- SS SS ------ EEE SS -- S GGG TT EEE -SS --------:
ExpBur :ebbebebebbeebebeebbebbbbebebbbb-----ebeeeeeeeb------ebeebbbeebeb--eeebebebbeebeebbbb-ebebebe--------:
queryA 323:NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI: 422
: * * * * * * * * * ** *** ** * * * * :
6gff_J_1 270:XI------HAPSEGWSALXXXXXXXXXXXXXXXQLLNLDLSYNEIELIPDSFLEHLTSLCFLNLSRN--CLRTFEARRLGSLPC--LMLLDLSHNA----: 355
SecStr :- ------EETTTTEE --------------- EEE SS HHHHHH TT EEE SS-- EEEE STT S S-- EEE SS ----:
ExpBur :-e------ebeeeeeeee---------------ebeebbbbebebeebeeebbeebeebeebebbeb--ebeebebeeeebbee--bbebbbbebe----:
Contact : b b bb b b b
queryA 423:ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR--RVA-----LKNVDSSPSPFQPLRNLTILDLSN: 515
: ** * ** * * * * * ** ***** * ** * * * * :
6gff_J_1 356:----------LETLELG------------ARALGSLRTLLLQGNALRDLPPYTFANLASLQRLNLQGNRVSPCXXXXXXXXXXCVAFSGITSLRSLSLVD: 433
SecStr :---------- EEEE ------------TTTSTT EEE TT TTTGGG TT EEE TTS B ---------- B SS SS EEE TT:
ExpBur :----------beebebe------------eebbeebbebbbbebebeebeeebbeebeebbebbbeebebebe----------ebbbeebeebbebbbbe:
queryA 516:NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIY--FLKGL-SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL: 612
:* * * * * * * *** * ** * * * ** * ** * * * *** ***:
6gff_J_1 434:NEI-----------ELLRAGAFLHTPLTELDLSSNPGLEVATGALGGLEASLEVLALQGNGLMVLQVDL-PCFICLKRLNLAENRLSHLPA--WTQAVSL: 519
SecStr :S ----------- EE TTTTTT SEEE S TT EE TTSS S TTT EEE TTS S S G-GG TT EEE SS -- S :
ExpBur :beb-----------eebbeebbeebebebbebbebeebeeeeebbeebeeebbebbbeebebeeeeeee-eebeebbbbebbebebeeeee--eeeeeee:
queryA 613:KSLNLQKN: 620
: * * *:
6gff_J_1 520:EVLDLRNN: 527
SecStr : EEE :
ExpBur :eeeeeeee:
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[assembly_id:2]
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