[pdbjlvh2]Protein Model on 5zsc_A_1_C

Protein Model on 5zsc_A_1_C_1 (TEMPLATE: 5zsc )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR3_HUMAN)	A 1 (B)	polymer(polypeptide(L)) [775 aa]	Toll-like receptor 7 :B3Y653_MACMU
2	b		C 1 (C)	polymer(polyribonucleotide)	RNA (5'-R(PUPUPCPA)-3')	516N(R) 575D(K) (identity: 0.0 %/32.6 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5zsc_A_1 identity=32.6%

queryA        28:CTVSHEVADCSHLKLTQ-------------VPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL: 114
                :* **        * **              **  **   * * *  *         *    **  **   *      *  *   *         *   * :
5zsc_A_1     167:CYVSYSIEKDAFLNLTKLKVLSLKDNNVTTVPTVLPSTLTELYLYNNMIAEIQEDDFNNLNQLQILDLSGNC-----PR-CYNAP-FPCTPCKNNSPLQI: 259
SecStr          : SS  EE TTTTTT TT  EEE  SS   S  SS  TT SEEE  SS   B  TTTTTT TT  EEE  SSS-----  - TT S-S     GGG   B :    
ExpBur          :beeebebeeebbeebeebebbbbbbbebeebbeebbeebbebbbbbbebeebeeebbeebeebebbbbbbbb-----bb-eeeee-beeeeeeeeeebeb:    

queryA       115:SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP: 214
                :    *   * *  * * *** *      *    **  **** * *     *    *  *  *              **   *  *     * *    ** :
5zsc_A_1     260:PVNAFDALTELKVLRLHSNSLQHVPPRWFKNINNLQELDLSQNFLAK-EIGDAKFLHFLPNLI------------QLDLSFNFELQVYRASMNLSQAFSS: 346
SecStr          : TTTTTT TT  EEE  SS  S   GGGGTT     EEE  SSS HH-HHTT GGGGG TT  ------------EEE  S   TT  BSS    GGGGG:    
ExpBur          :eeebbeebeebebbbbbbbbbeebeeebbeebeebeebbbbbbebbe-bbeebebbeebeebe------------ebbbbbbbeeeeeeeebebbebbee:    

queryA       215:GCFHAIGRLFGLF---LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ: 311
                :     * *  *     *   ** *                   * * *               **  ***  *         *     *    *  * * :
5zsc_A_1     347:LKSLKILRIRGYVFKELKSFQLSP-------------------LHNLQ---------------NLEVLDLGTNFIKIANLSMFKQFKRLKVIDLSVNKIS: 412
SecStr          : TT  EEE  S  BSEE GGGGGG-------------------GTT T---------------T  EEE  SS   EE GGGGGGGTT SEEE  SS   :    
ExpBur          :beebebbbbbbbbbeebeeebbeb-------------------bbebe---------------ebebbbbbebebeebebbbbeebeebebbbbbebebe:    

queryA       312:HLFSHS-------------------LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS: 392
                :                         *  *   **    **                      *    *    * *  ***  *  *  ** * **    *:
5zsc_A_1     413:PXXXXXXXXXXXXXXXXXXXXXXXVLEQLYYFRYDKYARSCRFKXXXXXXXXX----XXSCYKYGQTLDLSKNSIFFIKSSDFQHLSFLKCLNLSGNLIS: 508
SecStr          : -----------------------   SSSTT S TT   SS  ---------------  GGGS EEE  SS      GGGGTT TT SEEE TTS   :    
ExpBur          :e-----------------------eebeeebeeebbeeeeeeee---------------ebeeeeebbbbbebebeebebeebeebebbbbbbbbebebe:    

queryA       393:LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL: 492
                :  **    *  **   *  *    *      * **  *  *****   *              * *    *   * *            ** **      :
5zsc_A_1     509:-QTLNGSEFQPLAE--LRYLDFSNNRLDLLHSTAFEELRKLEVLDISSNS--------HYFQSEGITHM-LNFTKNLKV----------LQKLMMNDNDI: 586
SecStr          :-    S TTTT TT--  EEE  SS      TTTTTT TT  EEE  S  --------GGGGSTT    -GGGGTT TT----------  EEE TT   :    
ExpBur          :-bebebebbebbee--bebbbbbebebbbeeeebbebbeebebbbbbebe--------eebeeeeeebb-bebbeebee----------beebbbbebeb:    

queryA       493:KNVDSSPSPFQPLRNLTI----LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL: 588
                :    *       ** *      **       *        * *** **   * *  *      * *         *  * *  **      *    *  *:
5zsc_A_1     587:SSSTSRTMESESLRTLEFRGNHLDVLWRDGDNRYLQLFKNLLKLEELDISKNSLSFLPSGVFDGMP-------PNLKNLSLAKNGLKSFIWEKLRYLKNL: 679
SecStr          :   SSS  EESS  EEE  SS HHHHT TT  TTTTTTTEETT  EEE  SS  SS  TTTTTTS -------TT  EEE  SS      GGGGGG TT :    
ExpBur          :eebebeebebebbebbbbebbebeebbeeeeeebbebbeebeebeebbbbebebeebbeebbebbb-------eebeebbbbebebeebebeebeebeeb:    
Contact         :                           b                                                          b             

queryA       589:KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFR-------------------------NLTELDMRFNPFDCTCESIAWFVNWINE: 663
                :   **  * * * *    *   *** * *  * * *  *     **                          **  *    * * ***    *** *   :
5zsc_A_1     680:ETLDLSHNQLTTVPERLSNCSRSLKNLILKNNQIRSLTKYFLQDAFQLRYLDLSSNKIQMIQKTSFPENVLNNLKMLLLHHNRFLCTCDAV-WFVWWVQH: 778
SecStr          : EEE  SS      S GGGT SS  EEE  SS      TTTTTT TT  EEE  SS      GGGS HHHHTT SEEE  SS EE SGGGH-HHHHHHHH:    
ExpBur          :ebbebbebebeebbeebeebbebbeebbbeebebeebbeebbeebeebeebbbbebebeebeeebbeeebbeebeebbbbebebebeeebe-bbbebbbb:    

queryA       664:THTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCK: 697
                :*   ** *     *  *    *  *   *   * :
5zsc_A_1     779:TEVTIPYLATDVTCVGPGAHKGQSVISLDLYTCE: 812
SecStr          :  S  TTHHHH BEEESGGGTT BGGG   GGGG:    
ExpBur          :bebebeeeeeebebebeeeeeeeebbebebeeee:

Protein Model on 5zsc_A_1_C_1 (TEMPLATE: 5zsc )

Input Residue Numbers for Focused Sites