[pdbjlvh2]Protein Model on 5zsb_B_1_D

Protein Model on 5zsb_B_1_D_1 (TEMPLATE: 5zsb )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR3_HUMAN)	B 1 (A)	polymer(polypeptide(L)) [773 aa]	Toll-like receptor 7 :B3Y653_MACMU
2	b		D 1 (D)	polymer(polyribonucleotide)	RNA (5'-R(APUPUPAP*A)-3')	516N(R) (identity: 0.0 %/32.6 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5zsb_B_1 identity=32.6%

queryA        28:CTVSHEVADCSHLKLTQ-------------VPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL: 114
                :* **        * **              **  **   * * *  *         *    **  **   *      *  *   *         *   * :
5zsb_B_1     167:CYVSYSIEKDAFLNLTKLKVLSLKDNNVTTVPTVLPSTLTELYLYNNMIAEIQEDDFNNLNQLQILDLSGNC-----PR-CYNAP-FPCTPCKNNSPLQI: 259
SecStr          : SS  EE TTTTTT TT  EEE  SS   S  SS  TT SEEE  SS   B  TTTTTT TT  EEE TTSS-----  - TT S-S     GGG   B :    
ExpBur          :beeebeeeeebbeebeebebbbbbbbebeebbeebbebbbebbbbbbebeebeeebbeebeebebbbbbbbb-----bb-eeeee-beeeebeeeeebeb:    

queryA       115:SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP: 214
                :    *   * *  * * *** *      *    **  **** * *     *    *  *  *              **   *  *     * *    ** :
5zsb_B_1     260:PVNAFDALTELKVLRLHSNSLQHVPPRWFKNINNLQELDLSQNFLAK-EIGDAKFLHFLPNLI------------QLDLSFNFELQVYRASMNLSQAFSS: 346
SecStr          : TTTTTT TT  EEE  SS  S   GGGGSS     EEE  SS  TT-HHHH GGGGG TT  ------------EEE  S   TT  BSS    GGGGG:    
ExpBur          :eeebbebbeebebbbbbbbbbeebeeebbeebeebeebbbbbbebbe-bbbebebbeebeebe------------ebbbbbbbeeeeeeeebebbebbee:    

queryA       215:GCFHAIGRLFGLF---LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ: 311
                :     * *  *     *   ** *                   * * *               **  ***  *         *     *    *  * * :
5zsb_B_1     347:LKSLKILRIRGYVFKELKSFQLSP-------------------LHNLQ---------------NLEVLDLGTNFIKIANLSMFKQFKRLKVIDLSVNKIS: 412
SecStr          : TT  EEE TT  BSEE GGGGGG-------------------GTT T---------------T  EEE  SS   EE GGGGGGGTT SEEE  SS   :    
ExpBur          :beebebbbbbbbbbeebeeebbeb-------------------beebe---------------ebebbbbbebebeebebbbbeebeebebbbbbebebe:    

queryA       312:HLFSHS-------------------LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS: 392
                :                         *  *   **    **                      *    *    * *  ***  *  *  ** * **    *:
5zsb_B_1     413:PXXXXXXXXXXXXXXXXXXXXXXXVLEQLYYFRYDKYARSCRXXXXXXXXXXX----XXSCYKYGQTLDLSKNSIFFIKSSDFQHLSFLKCLNLSGNLIS: 508
SecStr          : -----------------------   SS TT S TT     -----------------  GGGS EEE  SS      GGGGTT TT SEEE TTS   :    
ExpBur          :e-----------------------eebeeebeeebeeeeeee-----------------ebeeeeebbbbbebebeebeeeebeebebbbbbbbbebebe:    

queryA       393:LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL: 492
                :  **    *  **   *  *    *      * **  *  *****   *              * *    *   * *            ** **      :
5zsb_B_1     509:-QTLNGSEFQPLAE--LRYLDFSNNRLDLLHSTAFEELRKLEVLDISSNS--------HYFQSEGITHM-LNFTKNLKV----------LQKLMMNDNDI: 586
SecStr          :-    S S TT TT--  EEE  SS   TT TTTTTT TT  EEE  S  --------GGGGSTT    -GGGGGG TT----------  EEE TT   :    
ExpBur          :-bebebebbebbee--bebbbbbebebbbeeeebbebbeebebbbbbebe--------eebeeeeeebb-bebbeebee----------beebbbbebeb:    

queryA       493:KNVDSSPSPFQPLRNLTI----LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL: 588
                :    *       ** *      **       *        * *** **   * *  *      * *         *  * *  **      *    *  *:
5zsb_B_1     587:SSSTSRTMESESLRTLEFRGNHLDVLWRDGDNRYLQLFKNLLKLEELDISKNSLSFLPSGVFDGMP-------PNLKNLSLAKNGLKSFIWEKLRYLKNL: 679
SecStr          :   SSS   BSS  EEE  SS HHHHT TT  TTTTTTTTBTT  EEE  SS  SS  TTTTTTS -------TT  EEE  SS      GGGGGG TT :    
ExpBur          :eebebeebebebbebbbbebbebeebbeeeeeebbebbeebeebeebbbbebebeebbeebbebbb-------eebeebbbbebebeebebeebeebeeb:    
Contact         :                           b                                                                        

queryA       589:KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFR-------------------------NLTELDMRFNPFDCTCESIAWFVNWINE: 663
                :   **  * * * *    *   *** * *  * * *  *     **                          **  *    * * ***    *** *   :
5zsb_B_1     680:ETLDLSHNQLTTVPERLSNCSRSLKNLILKNNQIRSLTKYFLQDAFQLRYLDLSSNKIQMIQKTSFPENVLNNLKMLLLHHNRFLCTCDAV-WFVWWVQH: 778
SecStr          : EEE  SS      S GGGT SS  EEE  SS      TTTTTT TT  EEE  SS      TTTS HHHHTT SEEE  S  EE SGGGH-HHHHHHHH:    
ExpBur          :ebbebbebebeebbeebbebbeebeebbbeebebeebbeebbeebeebeebbbbebebeebeeebbbeebbebbeebbbbebebebeeebe-bbbebbbb:    

queryA       664:THTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCK: 697
                :*   ** *     *  *    *  *   *   * :
5zsb_B_1     779:TEVTIPYLATDVTCVGPGAHKGQSVISLDLYTCE: 812
SecStr          :  S  TTTTTS BEEESGGGTT BSTT   GGGG:    
ExpBur          :bebebeeeeeebebebeeeeeeeebbebebeeee:

Protein Model on 5zsb_B_1_D_1 (TEMPLATE: 5zsb )

Input Residue Numbers for Focused Sites